def testCAL_Gk_Neuron(self):
data = np.c_[self.tseries, self.gk]
try:
err = compare_channel_data(data, self.channelname, 'Gk', 'neuron', x_range=(simtime/10.0, simtime), plot=True)
self.assertLess(err, 0.01)
except IOError:
print('Could not find NRN data')
def testCaT_Vm_Neuron(self):
data = np.c_[self.tseries, self.vm]
try:
err = compare_channel_data(data, self.channelname, 'Vm', 'neuron', x_range=(simtime/10.0, simtime))
self.assertLess(err, 0.01)
except IOError:
print('Could not find NRN data')
def testCaPool_Ca_Neuron(self):
print(self.ca.shape)
data = np.c_[self.tseries, self.ca]
try:
err = compare_channel_data(data, self.poolname, 'Ca', 'neuron', x_range=(simtime/10.0, simtime), plot=True)
self.assertLess(err, 0.01)
except IOError:
print('Could not find NRN data')
def testNaF_TCR_Gk_Neuron(self):
print('Testing NEURON Gk ...', end='')
data = np.c_[self.tseries, self.gk]
err = compare_channel_data(data,
self.channelname,
'Gk',
'neuron',
x_range=(simtime / 10.0, simtime),
plot=True)
self.assertLess(err, 0.05)
print('OK')
def testCaT_Vm_Neuron(self):
data = np.c_[self.tseries, self.vm]
try:
err = compare_channel_data(data,
self.channelname,
'Vm',
'neuron',
x_range=(simtime / 10.0, simtime))
self.assertLess(err, 0.01)
except IOError:
print('Could not find NRN data')
def testAR_Gk_Neuron(self):
data = np.c_[self.tseries, self.gk]
try:
err = compare_channel_data(data,
self.channelname,
'Gk',
'neuron',
x_range=(simtime / 10.0, simtime),
plot=True)
self.assertLess(err, 0.01)
except IOError:
print('Could not find NRN data')
def testNaF_TCR_Vm_Neuron(self):
print 'Testing NEURON Vm ...',
data = np.c_[self.tseries, self.vm]
err = compare_channel_data(data, self.channelname, 'Vm', 'neuron', x_range=(simtime/10.0, simtime))
self.assertLess(err, 0.01)
print 'OK'
def testNaF_TCR_Gk_Moose(self):
print 'Testing MOOSE Gk ...',
err = compare_channel_data(self.gk, TestNaF_TCR.channelname, 'Gk', 'moose', x_range=(simtime/10.0, simtime))
self.assertLess(err, 0.05)
print 'OK'
def testNaF_TCR_Vm_Moose(self):
print 'Testing MOOSE Vm ...',
err = compare_channel_data(self.vm, TestNaF_TCR.channelname, 'Vm', 'moose', x_range=(simtime/10.0, simtime))
self.assertLess(err, 0.01)
print 'OK'
def testNaF_Gk_Neuron(self):
print 'Testing NEURON Gk ...',
data = np.c_[self.tseries, self.gk]
err = compare_channel_data(data, self.channelname, 'Gk', 'neuron', x_range=(simtime/10.0, simtime))
self.assertLess(err, 0.05)
print 'OK'
def testNaPF_TCR_Gk_Neuron(self):
print('Testing NEURON Gk ...', end='')
data = np.c_[self.tseries, self.gk]
err = compare_channel_data(data, self.channelname, 'Gk', 'neuron', x_range=(simtime/10.0, simtime), plot=True)
self.assertLess(err, 0.05)
print('OK')
def testNaF_TCR_Gk_Moose(self):
print "Testing MOOSE Gk ...",
err = compare_channel_data(self.gk, TestNaF_TCR.channelname, "Gk", "moose", x_range=(simtime / 10.0, simtime))
self.assertLess(err, 0.05)
print "OK"
def testNaPF_TCR_Vm_Neuron(self):
print "Testing NEURON Vm ...",
data = np.c_[self.tseries, self.vm]
err = compare_channel_data(data, self.channelname, "Vm", "neuron", x_range=(simtime / 10.0, simtime))
self.assertLess(err, 0.01)
print "OK"
def testAR_Vm_Neuron(self):
data = np.c_[self.tseries, self.vm]
err = compare_channel_data(data, self.channelname, 'Vm', 'neuron', x_range=(simtime/10.0, simtime))
self.assertLess(err, 0.01)
def testCaT_Vm_Neuron(self):
data = np.c_[self.tseries, self.vm]
err = compare_channel_data(data, self.channelname, 'Vm', 'neuron', x_range=(simtime/10.0, simtime))
self.assertLess(err, 0.01)
def testKA_Gk_Neuron(self):
data = np.c_[self.tseries, self.gk]
err = compare_channel_data(data, self.channelname, 'Gk', 'neuron', plot=True)
self.assertLess(err, 0.01)
def testCaPool_Ca_Neuron(self):
print self.ca.shape
data = np.c_[self.tseries, self.ca]
err = compare_channel_data(data, self.poolname, 'Ca', 'neuron', x_range=(simtime/10.0, simtime), plot=True)
self.assertLess(err, 0.01)
def testNaF_Gk_Neuron(self):
print "Testing NEURON Gk ...",
data = np.c_[self.tseries, self.gk]
err = compare_channel_data(data, self.channelname, "Gk", "neuron", x_range=(simtime / 10.0, simtime))
self.assertLess(err, 0.05)
print "OK"
def testCaPool_Ca_Neuron(self):
print self.ca.shape
data = np.c_[self.tseries, self.ca]
err = compare_channel_data(data, self.poolname, 'Ca', 'neuron', x_range=(simtime/10.0, simtime), plot=True)
self.assertLess(err, 0.01)
def testCaT_Gk_Neuron(self):
data = np.c_[self.tseries, self.gk]
err = compare_channel_data(data, self.channelname, 'Gk', 'neuron', x_range=(simtime/10.0, simtime), plot=True)
self.assertLess(err, 0.01)
def testNaF_TCR_Vm_Moose(self):
print "Testing MOOSE Vm ...",
err = compare_channel_data(self.vm, TestNaF_TCR.channelname, "Vm", "moose", x_range=(simtime / 10.0, simtime))
self.assertLess(err, 0.01)
print "OK"
def testAR_Gk_Neuron(self):
data = np.c_[self.tseries, self.gk]
err = compare_channel_data(data, self.channelname, 'Gk', 'neuron', x_range=(simtime/10.0, simtime), plot=True)
self.assertLess(err, 0.01)
def testNaPF_TCR_Gk_Neuron(self):
print("Testing NEURON Gk ...", end="")
data = np.c_[self.tseries, self.gk]
err = compare_channel_data(data, self.channelname, "Gk", "neuron", x_range=(simtime / 10.0, simtime), plot=True)
self.assertLess(err, 0.05)
print("OK")
