Exemplo n.º 1
0
 def __init__(self,
              in_file_name,
              out_particles_file_name,
              tmp_dir,
              mask_file_name=None,
              max_scale=3.,
              live_thresh=-100.,
              seed_thresh=-80.,
              scale_samples=3,
              down_sample_rate=1,
              min_intensity=-200,
              max_intensity=200):
     ChestParticles.__init__(
         self,
         feature_type="ridge_surface",
         in_file_name=in_file_name,
         out_particles_file_name=out_particles_file_name,
         tmp_dir=tmp_dir,
         mask_file_name=mask_file_name,
         max_scale=max_scale,
         scale_samples=scale_samples,
         down_sample_rate=down_sample_rate)
     self._max_intensity = max_intensity
     self._min_intensity = min_intensity
     self._live_thresh = live_thresh
     self._seed_thresh = seed_thresh
     self._max_scale = max_scale
     self._scale_samples = scale_samples
     self._down_sample_rate = down_sample_rate
     self._mode_thresh = -0.5
     self._population_control_period = 10
     self._no_add = 0
Exemplo n.º 2
0
 def __init__(self,
              in_file_name,
              out_particles_file_name,
              tmp_dir,
              mask_file_name=None,
              max_scale=11,
              live_thresh=-100.,
              seed_thresh=-80.,
              scale_samples=5,
              multi_res_levels=2):
     ChestParticles.__init__(
         self,
         feature_type="ridge_line",
         in_file_name=in_file_name,
         out_particles_file_name=out_particles_file_name,
         tmp_dir=tmp_dir,
         mask_file_name=mask_file_name,
         max_scale=max_scale,
         scale_samples=scale_samples)
     self._multi_res_levels = multi_res_levels
     self._max_intensity = 400
     self._min_intensity = -900
     self._live_thresh = live_thresh
     self._seed_thresh = seed_thresh
     self._mode_thresh = -0.5
     self._population_control_period = 10
    def __init__(self, in_file_name, out_particles_file_name, tmp_dir,
                 mask_file_name=None, max_scale=6., live_thresh=40.,
                 seed_thresh=30., scale_samples=5, down_sample_rate=1,
                 min_intensity=-1100, max_intensity=-400):
        ChestParticles.__init__(self, feature_type="valley_line",
                            in_file_name=in_file_name,
                            out_particles_file_name=out_particles_file_name,
                            tmp_dir=tmp_dir, mask_file_name=mask_file_name,
                            max_scale=max_scale, scale_samples=scale_samples,
                            down_sample_rate=down_sample_rate)
        self._max_intensity = max_intensity
        self._min_intensity = min_intensity
        self._max_scale = max_scale
        self._scale_samples = scale_samples
        self._down_sample_rate = down_sample_rate
          
        self._live_thresh = live_thresh
        self._seed_thresh = seed_thresh
       
        self._phase_iterations = [100, 10, 75]

        self._phase_irads=[1.7,1.15,1.15]
        self._phase_srads=[1.2,2,4]

        self._phase_population_control_periods = [6,20,17]
        self._phase_alphas = [1.0, 0.35, 0.84]
        self._phase_betas = [0.77, 0.75, 0.57]
        self._phase_gammas = [0.37, 0.53, 0.57]
          
        #Default init
        self._init_mode = "PerVoxel"
        self._ppv = 2
        self._nss = 2
 def __init__(self, in_file_name, out_particles_file_name, tmp_dir,
              mask_file_name=None, max_scale=8., live_thresh=45.,
              seed_thresh=45., scale_samples=5, multi_res_levels=2):
     ChestParticles.__init__(self, feature_type="valley_line",
                         in_file_name=in_file_name,
                         out_particles_file_name=out_particles_file_name,
                         tmp_dir=tmp_dir, mask_file_name=mask_file_name,
                         max_scale=max_scale, scale_samples=scale_samples)
     self._multi_res_levels = multi_res_levels
     self._max_intensity = -400
     self._min_intensity = -1100
     self._live_thresh = live_thresh
     self._seed_thresh = seed_thresh
 def __init__(self, in_file_name, out_particles_file_name, tmp_dir,
              mask_file_name=None, max_scale=11, live_thresh=-100.,
              seed_thresh=-80., scale_samples=5, multi_res_levels=2):
     ChestParticles.__init__(self, feature_type="ridge_line",
                         in_file_name=in_file_name,
                         out_particles_file_name=out_particles_file_name,
                         tmp_dir=tmp_dir, mask_file_name=mask_file_name,
                         max_scale=max_scale, scale_samples=scale_samples)
     self._multi_res_levels = multi_res_levels
     self._max_intensity = 400
     self._min_intensity = -900
     self._live_thresh = live_thresh
     self._seed_thresh = seed_thresh
     self._mode_thresh = -0.5
     self._population_control_period = 10
Exemplo n.º 6
0
    def __init__(self,
                 in_file_name,
                 out_particles_file_name,
                 tmp_dir,
                 mask_file_name=None,
                 max_scale=6,
                 live_thresh=-95,
                 seed_thresh=-70,
                 scale_samples=10,
                 down_sample_rate=1,
                 min_intensity=-800,
                 max_intensity=400):
        ChestParticles.__init__(
            self,
            feature_type="ridge_line",
            in_file_name=in_file_name,
            out_particles_file_name=out_particles_file_name,
            tmp_dir=tmp_dir,
            mask_file_name=mask_file_name,
            max_scale=max_scale,
            scale_samples=scale_samples,
            down_sample_rate=down_sample_rate)
        self._max_intensity = max_intensity
        self._min_intensity = min_intensity
        self._max_scale = max_scale
        self._scale_samples = scale_samples
        self._down_sample_rate = down_sample_rate

        self._live_thresh = live_thresh
        self._seed_thresh = seed_thresh

        self._mode_thresh = -0.3
        self._population_control_period = 3

        self._phase_iterations = [100, 10, 75]

        self._phase_irads = [1.5, 1.15, 0.8]
        self._phase_srads = [1.2, 2, 4]

        self._phase_population_control_periods = [6, 20, 17]
        self._phase_alphas = [1.0, 0.35, 0.84]
        self._phase_betas = [0.77, 0.75, 0.57]
        self._phase_gammas = [0.37, 0.53, 0.57]

        #Default init mode
        self._init_mode = "PerVoxel"
        self._ppv = 2
        self._nss = 2
    def __init__(self, in_file_name, out_particles_file_name, tmp_dir,
                 mask_file_name=None, max_scale=6., live_thresh=-100.,
                 seed_thresh=-80., scale_samples=6, down_sample_rate=1, min_intensity=-800, max_intensity=400):
        ChestParticles.__init__(self, feature_type="ridge_line",
                            in_file_name=in_file_name,
                            out_particles_file_name=out_particles_file_name,
                            tmp_dir=tmp_dir, mask_file_name=mask_file_name,
                            max_scale=max_scale, scale_samples=scale_samples,
                            down_sample_rate=down_sample_rate)
        self._max_intensity = max_intensity
        self._min_intensity = min_intensity
        self._live_thresh = live_thresh
        self._seed_thresh = seed_thresh
        self._scale_samples = scale_samples
        self._down_sample_rate = down_sample_rate

        self._mode_thresh = -0.5
        self._population_control_period = 6
    def __init__(self, in_file_name, out_particles_file_name, tmp_dir,
                 mask_file_name=None, max_scale=6., live_thresh=50.,
                 seed_thresh=40., scale_samples=5, down_sample_rate=1, min_intensity=-1100, max_intensity=-400):
        ChestParticles.__init__(self, feature_type="valley_line",
                            in_file_name=in_file_name,
                            out_particles_file_name=out_particles_file_name,
                            tmp_dir=tmp_dir, mask_file_name=mask_file_name,
                            max_scale=max_scale, scale_samples=scale_samples,
                            down_sample_rate=down_sample_rate)
        self._max_intensity = max_intensity
        self._min_intensity = min_intensity
        self._live_thresh = live_thresh
        self._seed_thresh = seed_thresh
        self._max_scale = max_scale
        self._scale_samples = scale_samples
        self._down_sample_rate = down_sample_rate

        self._population_control_period = 6
Exemplo n.º 9
0
    def __init__(self,
                 in_file_name,
                 out_particles_file_name,
                 tmp_dir,
                 mask_file_name=None,
                 max_scale=6.,
                 live_thresh=-100.,
                 seed_thresh=-80.,
                 scale_samples=6,
                 down_sample_rate=1,
                 min_intensity=-800,
                 max_intensity=400):
        ChestParticles.__init__(
            self,
            feature_type="ridge_line",
            in_file_name=in_file_name,
            out_particles_file_name=out_particles_file_name,
            tmp_dir=tmp_dir,
            mask_file_name=mask_file_name,
            max_scale=max_scale,
            scale_samples=scale_samples,
            down_sample_rate=down_sample_rate)
        self._max_intensity = max_intensity
        self._min_intensity = min_intensity
        self._live_thresh = live_thresh
        self._seed_thresh = seed_thresh
        self._scale_samples = scale_samples
        self._down_sample_rate = down_sample_rate

        self._mode_thresh = -0.5
        self._population_control_period = 6

        self._iterations_phase1 = 10
        self._iterations_phase2 = 20
        self._iterations_phase3 = 50

        self._irad_phase1 = 1.7
        self._irad_phase2 = 1.15
        self._irad_phase3 = 1.15

        self._srad_phase1 = 1.2
        self._srad_phase2 = 2
        self._srad_phase3 = 4
    def __init__(self, in_file_name, out_particles_file_name, tmp_dir,
                 mask_file_name=None, max_scale=1.2, live_thresh=-30.6,
                 seed_thresh=-30.6, scale_samples=1, down_sample_rate=1, min_intensity=-1000, max_intensity=-500):
        ChestParticles.__init__(self, feature_type="ridge_surface",
                            in_file_name=in_file_name,
                            out_particles_file_name=out_particles_file_name,
                            tmp_dir=tmp_dir, mask_file_name=mask_file_name,
                            max_scale=max_scale, scale_samples=scale_samples,
                            down_sample_rate=down_sample_rate)

        self._max_intensity = max_intensity
        self._min_intensity = min_intensity
        self._live_thresh = live_thresh
        self._seed_thresh = seed_thresh
        self._max_scale = max_scale
        self._scale_samples = scale_samples
        self._down_sample_rate = down_sample_rate

        self._mode_thresh = -0.5
        self._population_control_period = 10
        self._no_add = 0
  
        self._verbose = 1