def handle(self, *args, **options):
#for dossier, sous_dossiers, fichiers in os.walk('/neuro/users/chris/data'):
for dossier, sous_dossiers, fichiers in os.walk('/neuro/users/yann.mallegol/Documents/internship/chris-db/python_test/dicoms/0076-1.2.840.113619.2.135.2025.2078900.5939.1097298450.587.dcm'):
for fichier in fichiers:
fullpath = os.path.join(dossier, fichier)
import pdb; pdb.set_trace()
print(fullpath)
try:
ds = pydicom.read_file(fullpath)
patient=Patient()
patient.PatientId=ds.PatientId
patient.save()
import pdb; pdb.set_trace()
except pydicom.errors.InvalidDicomError:
print('not possible to know this information')
def handle(self, *args, **options):
for dossier, sous_dossiers, fichiers in os.walk('/neuro/users/yann.mallegol/Documents/internship/last_version/version_2.0/chris_db-master/data_base/management/commands/dicom_files'):
for fichier in fichiers:
fullpath = os.path.join(dossier, fichier)
print(fullpath)
try:
ds = pydicom.read_file(fullpath)
####################### Patient Table #####################
try:
patient_test=Patient()
patient_test = Patient.objects.create(PatientName=ds.PatientName,
PatientSex=ds.PatientSex,
PatientBirthdate=ds.PatientBirthdate,
PatientAge=ds.PatientAge,
PatientId=ds.PatienId)
except NameError:
patient_test.PatientName = 'undefined'
except NameError:
patient_test.PatientSex='undefined'
except NameError:
patient_test.PatientBirthdate= 'undefined'
except NameError:
patient_test.PatientAge='undefined'
except NameError:
patient_test.PatientId = 'undefined'
except AttributeError:
patient_test.PatientName = 'undefined'
except AttributeError:
patient_test.PatientSex='undefined'
except AttributeError:
patient_test.PatientBirthdate='undefined'
except AttributeError:
patient_test.PatientAge='undefined'
except AttributeError:
patient_test.PatientId = 'undefined'
patient_test.save()
######################## Study Table ##########################
try:
study_test=Study()
study_test = Study.objects.create(StudyName=ds.StudyName,
Pathology=ds.Pathology,
ManufacturerModelName=ds.ManufacturerModelName,
BodyPartExaminated=ds.BodyPartExaminated,
MagneticFieldStrength=ds.MagneticFieldStrength,
Modality=ds.Modality,
StudyInstanceUID=ds.StudyInstanceUID,
patient=patient_test)
except NameError:
study_test.StudyName = 'undefined'
except NameError:
study_test.Pathology='undefined'
except NameError:
study_test.ManufacturerModelName= 'undefined'
except NameError:
study_test.BodyPartExaminated='undefined'
except NameError:
study_test.MagneticFieldStrength = 'undefined'
except NameError:
study_test.Modality = 'undefined'
except NameError:
study_test.StudyInstanceUID = 'undefined'
except AttributeError:
patient_test.StudyName = 'undefined'
except AttributeError:
study_test.Pathology='undefined'
except AttributeError:
study_test.ManufacturerModelName= 'undefined'
except AttributeError:
study_test.BodyPartExaminated='undefined'
except AttributeError:
study_test.MagneticFieldStrength = 'undefined'
except AttributeError:
study_test.Modality = 'undefined'
except AttributeError:
study_test.StudyInstanceUID = 'undefined'
study_test.save()
############### Series table #################
try:
series_test=Series()
series_test = Series.objects.create(SeriesName=ds.SeriesName,
SeriesInstanceUID=ds.SeriesInstanceUID,
ProtocolName=ds.ProtocolName,
study=study_test)
except NameError:
series_test.SeriesName = 'undefined'
except NameError:
series_test.SeriesInstanceUID='undefined'
series_test.save()
############# MR_Params ###############
mr_params_test=MR_Params()
mr_params_test = MR_Params.objects.create(SliceThickness=ds.SliceThickness,
EchoTime=ds.EchoTime,
InversionTime=ds.InversionTime,
RepetionTime=ds.RepetionTime,
modality_params= series_test)
except pydicom.errors.InvalidDicomError:
print('not possible to know this information')
