def robotLoadPlates(self):
"""Generates Biomek FX readable .csv files containing cherrypicking
mappings for setting up the current round of screening."""
title = "Choose folder for output..."
directory = QtGui.QFileDialog.getExistingDirectory(self, title, self.var["path"])
samples = self.tabs.getSamplesForLoading()
CherryTable.forRobot(samples, directory)
def cherryPickNURobot(self):
"""Cherrypicks the Negatives and Unknowns and creates robot files."""
title = "Choose folder for output..."
directory = QtGui.QFileDialog.getExistingDirectory(self, title, self.var["path"])
controls, ok = SetControls.run(4)
if ok:
samples = self.tabs.getNegativeUnknowns(controls)
CherryTable.forRobot(samples, directory)
def handLoadPlates(self):
"""Generates Excel sheets containing cherrypicking mappings for
setting up the current round of screening."""
title = "Hand cherrypick file..."
fileName, f = QtGui.QFileDialog.getSaveFileName(self, title)
fileName = fileName.split(".")[0] + ".xls"
samples = self.tabs.getSamplesForLoading()
CherryTable.forHand(samples, fileName)
def cherryPickNUHand(self):
"""Cherrypicks the Negatives and Unknowns and creates hand files."""
title = "Hand cherrypick N/U file..."
fileName, f = QtGui.QFileDialog.getSaveFileName(self, title)
fileName = fileName.split(".")[0] + ".xls"
controls, ok = SetControls.run(4)
if ok:
samples = self.tabs.getNegativesUnknowns()
CherryTable.forHand(samples, fileName)
def cherryPickNUCRobot(self):
"""Cherrypicks the Negatives, Unknowns, and contaminants, and creates
robot loading files."""
title = "Choose folder for output..."
directory = QtGui.QFileDialog.getExistingDirectory(self, title, self.var["path"])
contaminants = self.tabs.getPotentialContaminants()
contaminants, ok = ChooseContaminants.run(contaminants)
if ok:
controls, ok = SetControls.run(4)
if ok:
samples = self.tabs.getNegativeUnknownContaminants(controls, contaminants)
CherryTable.forRobot(samples, directory)
