def write(self, format, path=None, return_string=None, *args):
""" Serialize and write ``Run`` instances.
Serialize ``Run`` instance using the stated ``format``.
Args:
format (str): The output format: Currently only "pickle".
path (str): Path to output file
.. todo:: Write checks for ``format`` and ``path``.
"""
if format == 'pickle':
with open(path, 'wb') as fh:
pickle.dump(self, fh)
elif format == 'csv':
output = run_io.serialize_run_for_r(self)
else:
raise Exception('Format is unknown: {}'.format(format))
if path:
with open(path, 'w') as fh:
fh.write(output)
if return_string:
return output
def test_write_run_csv_insulin(path_run):
test_run = run.Run.create(origin="config",
path=os.path.join(path_run,
TEST_RUN_CONFIG_SIRNA))
test_serial = run_io.serialize_run_for_r(test_run)
assert type(test_serial) == list
assert len(test_serial[0]) == len(test_serial[1])
def test_write_run_csv_insulin(path_run):
test_run = run.Run.create(origin="config",
path=os.path.join(path_run, TEST_RUN_CONFIG_SIRNA))
test_serial = run_io.serialize_run_for_r(test_run)
assert type(test_serial) == list
assert len(test_serial[0]) == len(test_serial[1])
