def initialize_persistant_query_request(ibs, qaid_chunk):
# FIXME: allow for multiple species or make a nicer way of ensuring that
# there is only one species here
species_text_set = set(ibs.get_annot_species_texts(qaid_chunk))
assert len(species_text_set) == 1, 'query chunk has more than one species'
species_text = list(species_text_set)[0]
# controller based exemplars
daid_list = ibs.get_valid_aids(is_exemplar=True,
species=species_text,
is_known=True,
minqual='poor')
num_names = len(set(ibs.get_annot_nids(daid_list)))
# TODO: choose vsmany K every time
# need to be able to update qreq_.qparams
vsmany_K = automated_params.choose_vsmany_K(num_names, qaid_chunk,
daid_list)
vsmany_cfgdict = dict(
K=vsmany_K,
Knorm=3,
#index_method='single',
pipeline_root='vsmany',
#return_expanded_nns=False,
#return_expanded_nns=True,
)
# Create New qreq
qreq_vsmany_ = ibs.new_query_request(qaid_chunk,
daid_list,
cfgdict=vsmany_cfgdict,
use_memcache=False)
return qreq_vsmany_
def query_vsmany_initial(ibs,
qaids,
daids,
use_cache=False,
qreq_vsmany_=None,
save_qcache=False):
r"""
Args:
ibs (IBEISController): ibeis controller object
qaids (list): query annotation ids
daids (list): database annotation ids
use_cache (bool): turns on disk based caching
qreq_vsmany_ (QueryRequest): persistant vsmany query request
Returns:
tuple: (newfsv_list, newscore_aids)
CommandLine:
python -m ibeis.algo.hots.special_query --test-query_vsmany_initial
Example:
>>> # DISABLE_DOCTEST
>>> from ibeis.algo.hots.special_query import * # NOQA
>>> ibs, valid_aids = testdata_special_query()
>>> qaids = valid_aids[0:1]
>>> daids = valid_aids[1:]
>>> use_cache = False
>>> # execute function
>>> qaid2_qres_vsmany, qreq_vsmany_ = query_vsmany_initial(ibs, qaids, daids, use_cache)
>>> qres_vsmany = qaid2_qres_vsmany[qaids[0]]
>>> # verify results
>>> result = qres_vsmany.get_top_aids().tolist()
>>> print(result)
[2, 6, 4]
"""
num_names = len(set(ibs.get_annot_nids(daids)))
vsmany_cfgdict = dict(K=automated_params.choose_vsmany_K(
num_names, qaids, daids),
Knorm=3,
index_method='multi',
pipeline_root='vsmany',
return_expanded_nns=True)
cm_list, qreq_vsmany_ = ibs.query_chips(qaids,
daids,
cfgdict=vsmany_cfgdict,
return_request=True,
use_cache=use_cache,
qreq_=qreq_vsmany_,
save_qcache=save_qcache)
qaid2_qres_vsmany = {cm.qaid: cm for cm in cm_list}
isnsum = qreq_vsmany_.qparams.score_method == 'nsum'
assert isnsum, 'not nsum'
assert qreq_vsmany_.qparams.pipeline_root != 'vsone'
return qaid2_qres_vsmany, qreq_vsmany_
def query_vsmany_initial(ibs, qaids, daids, use_cache=False, qreq_vsmany_=None,
save_qcache=False):
r"""
Args:
ibs (IBEISController): ibeis controller object
qaids (list): query annotation ids
daids (list): database annotation ids
use_cache (bool): turns on disk based caching
qreq_vsmany_ (QueryRequest): persistant vsmany query request
Returns:
tuple: (newfsv_list, newscore_aids)
CommandLine:
python -m ibeis.algo.hots.special_query --test-query_vsmany_initial
Example:
>>> # DISABLE_DOCTEST
>>> from ibeis.algo.hots.special_query import * # NOQA
>>> ibs, valid_aids = testdata_special_query()
>>> qaids = valid_aids[0:1]
>>> daids = valid_aids[1:]
>>> use_cache = False
>>> # execute function
>>> qaid2_qres_vsmany, qreq_vsmany_ = query_vsmany_initial(ibs, qaids, daids, use_cache)
>>> qres_vsmany = qaid2_qres_vsmany[qaids[0]]
>>> # verify results
>>> result = qres_vsmany.get_top_aids().tolist()
>>> print(result)
[2, 6, 4]
"""
num_names = len(set(ibs.get_annot_nids(daids)))
vsmany_cfgdict = dict(
K=automated_params.choose_vsmany_K(num_names, qaids, daids),
Knorm=3,
index_method='multi',
pipeline_root='vsmany',
return_expanded_nns=True
)
cm_list, qreq_vsmany_ = ibs.query_chips(
qaids, daids, cfgdict=vsmany_cfgdict, return_request=True,
use_cache=use_cache, qreq_=qreq_vsmany_, save_qcache=save_qcache)
qaid2_qres_vsmany = {cm.qaid: cm for cm in cm_list}
isnsum = qreq_vsmany_.qparams.score_method == 'nsum'
assert isnsum, 'not nsum'
assert qreq_vsmany_.qparams.pipeline_root != 'vsone'
return qaid2_qres_vsmany, qreq_vsmany_
def initialize_persistant_query_request(ibs, qaid_chunk):
# FIXME: allow for multiple species or make a nicer way of ensuring that
# there is only one species here
species_text_set = set(ibs.get_annot_species_texts(qaid_chunk))
assert len(species_text_set) == 1, 'query chunk has more than one species'
species_text = list(species_text_set)[0]
# controller based exemplars
daid_list = ibs.get_valid_aids(is_exemplar=True, species=species_text, is_known=True, minqual='poor')
num_names = len(set(ibs.get_annot_nids(daid_list)))
# TODO: choose vsmany K every time
# need to be able to update qreq_.qparams
vsmany_K = automated_params.choose_vsmany_K(num_names, qaid_chunk, daid_list)
vsmany_cfgdict = dict(
K=vsmany_K,
Knorm=3,
#index_method='single',
pipeline_root='vsmany',
#return_expanded_nns=False,
#return_expanded_nns=True,
)
# Create New qreq
qreq_vsmany_ = ibs.new_query_request(qaid_chunk, daid_list, cfgdict=vsmany_cfgdict, use_memcache=False)
return qreq_vsmany_
