Exemplos de get_family_members em Python

Exemplo n.º 1

def get_family_members(nextprot_id):
    url = nextprot_url + 'FA-' + nextprot_id
    res = urllib2.urlopen(url)
    html = res.read()
    match = re.match(r'(.*)http://www.uniprot.org/uniprot/\?query=family:([^"]*)"',\
             html, re.DOTALL|re.MULTILINE)
    family_name = match.groups()[1]
    gene_names = uniprot_client.get_family_members(family_name)
    return gene_names

Exemplo n.º 2

Arquivo: nextprot_client.py Projeto: majorseitan/bioagents

def get_family_members(nextprot_id):
    url = nextprot_url + 'FA-' + nextprot_id
    res = urllib2.urlopen(url)
    html = res.read()
    match = re.match(r'(.*)http://www.uniprot.org/uniprot/\?query=family:([^"]*)"',\
             html, re.DOTALL|re.MULTILINE)
    family_name = match.groups()[1]
    gene_names = uniprot_client.get_family_members(family_name)
    return gene_names

Exemplo n.º 3

Arquivo: test_uniprot_client.py Projeto: vishalbelsare/indra-1

def test_get_family_members():
    members = uniprot_client.get_family_members('RAF')
    assert 'ARAF' in members
    assert 'BRAF' in members
    assert 'RAF1' in members
    assert unicode_strs(members)

Exemplo n.º 4

Arquivo: test_uniprot_client.py Projeto: johnbachman/indra

def test_get_family_members():
    members = uniprot_client.get_family_members('RAF')
    assert 'ARAF' in members
    assert 'BRAF' in members
    assert 'RAF1' in members
    assert unicode_strs(members)

Exemplo n.º 5

def test_get_family_members():
    members = uniprot_client.get_family_members('RAF')
    assert('ARAF' in members)
    assert('BRAF' in members)
    assert('RAF1' in members)