def test_dataframe_builder():
df_builder = DataFrameBuilder(TestClass)
df_builder.add(test_variant, test_obj)
df = df_builder.to_dataframe()
expected = pd.DataFrame(OrderedDict([
("chr", ["X"]),
("pos", [10]),
("ref", ["CC"]),
("alt", ["C"]),
("a", [test_obj.a]),
("b", [test_obj.b]),
("c", [test_obj.c]),
]))
check_same_dataframes(df, expected)
def test_dataframe_builder():
df_builder = DataFrameBuilder(TestClass)
df_builder.add(test_variant, test_obj)
df = df_builder.to_dataframe()
expected = pd.DataFrame(
OrderedDict([
("chr", ["X"]),
("pos", [10]),
("ref", ["CC"]),
("alt", ["C"]),
("a", [test_obj.a]),
("b", [test_obj.b]),
("c", [test_obj.c]),
]))
check_same_dataframes(df, expected)
def test_dataframe_rename_and_converters_and_exclude():
df_builder = DataFrameBuilder(TestClass,
rename_dict={"c": "C"},
converters=dict(c=int),
exclude=["a", "b"])
df_builder.add(test_variant, test_obj)
df = df_builder.to_dataframe()
expected = pd.DataFrame(
OrderedDict([
("chr", ["X"]),
("pos", [10]),
("ref", ["CC"]),
("alt", ["C"]),
("C", [int(test_obj.c)]),
]))
check_same_dataframes(df, expected)
def test_dataframe_rename_and_converters_and_exclude():
df_builder = DataFrameBuilder(
TestClass,
rename_dict={"c": "C"},
converters=dict(c=int),
exclude=["a", "b"])
df_builder.add(test_variant, test_obj)
df = df_builder.to_dataframe()
expected = pd.DataFrame(OrderedDict([
("chr", ["X"]),
("pos", [10]),
("ref", ["CC"]),
("alt", ["C"]),
("C", [int(test_obj.c)]),
]))
check_same_dataframes(df, expected)
def test_dataframe_rename_and_converters():
df_builder = DataFrameBuilder(
TestClass,
rename_dict={"a": "A", "b": "B", "c": "C"},
converters=dict(a=float, c=int))
df_builder.add(test_variant, test_obj)
df = df_builder.to_dataframe()
expected = pd.DataFrame(OrderedDict([
("chr", ["X"]),
("pos", [10]),
("ref", ["CC"]),
("alt", ["C"]),
("A", [float(test_obj.a)]),
("B", [test_obj.b]),
("C", [int(test_obj.c)]),
]))
check_same_dataframes(df, expected)
def test_dataframe_rename_and_converters():
df_builder = DataFrameBuilder(TestClass,
rename_dict={
"a": "A",
"b": "B",
"c": "C"
},
converters=dict(a=float, c=int))
df_builder.add(test_variant, test_obj)
df = df_builder.to_dataframe()
expected = pd.DataFrame(
OrderedDict([
("chr", ["X"]),
("pos", [10]),
("ref", ["CC"]),
("alt", ["C"]),
("A", [float(test_obj.a)]),
("B", [test_obj.b]),
("C", [int(test_obj.c)]),
]))
check_same_dataframes(df, expected)
