def __init__(self, xml):
super(AbsorbanceMultiRead, self).__init__(xml)
xp = "//Section/Data?run:int=@Cycle/Well?well=@Pos/Multiple?location:well1=@MRW_Position&value=text()"
self.alz = XPathAnalyzer(xp)
self.alz.add_custom_type('well1', self.well1_fnc)
self.result = self.wc.walk(self.alz)
def __init__(self, xml):
super(AbsorbanceMultiRead, self).__init__(xml)
xp = "//Section/Data?run:int=@Cycle/Well?well=@Pos/Multiple?location:well1=@MRW_Position&value=text()"
self.alz = XPathAnalyzer(xp)
self.alz.add_custom_type('well1', self.well1_fnc)
self.result = self.wc.walk(self.alz)
class AbsorbanceMultiRead(PlateRead):
@staticmethod
def well1_fnc(val):
e = val.split(';')
return e
def __init__(self, xml):
super(AbsorbanceMultiRead, self).__init__(xml)
xp = "//Section/Data?run:int=@Cycle/Well?well=@Pos/Multiple?location:well1=@MRW_Position&value=text()"
self.alz = XPathAnalyzer(xp)
self.alz.add_custom_type('well1', self.well1_fnc)
self.result = self.wc.walk(self.alz)
def read(self):
return
class AbsorbanceMultiRead(PlateRead):
@staticmethod
def well1_fnc(val):
e = val.split(';')
return e
def __init__(self, xml):
super(AbsorbanceMultiRead, self).__init__(xml)
xp = "//Section/Data?run:int=@Cycle/Well?well=@Pos/Multiple?location:well1=@MRW_Position&value=text()"
self.alz = XPathAnalyzer(xp)
self.alz.add_custom_type('well1', self.well1_fnc)
self.result = self.wc.walk(self.alz)
def read(self):
return
# print etree.tostring(o.xobj , pretty_print = True)
o2 = XMLBind(objectify.fromstring(template),
namespaces={'ns': 'tecan.at.schema.documents'})
for key, value in o2.inspect(unique=True).iteritems():
print key, ":", value
# Walker Test with namespace
wc = XMLWalker(root)
xp = "//ReadingFilter?type=@type"
result = wc.walk(
XPathAnalyzer(xp, namespaces={'ns': 'tecan.at.schema.documents'}))
print len(result)
print result
# Walker Test without namespace
root = objectify.fromstring(etree.tostring(objectify.parse('gen.xml')))
wc = XMLWalker(root)
xp = "//Well?pos=@Pos/Scan?wave=@WL&val=text()"
result = wc.walk(XPathAnalyzer(xp))
print len(result)
print result[0]
'id_momentum': '/Id',
'plate_height': '/Height',
'plate_length': '/Length',
'plate_width': '/Width',
'stacking_plate_height': '/StackHeight',
'plate_numbering': '/Numbering',
'momentum_grip_force': '/GripForce'
}
a = '//PlateType?'
a += '&'.join([
key + "='" + value + "/text()'" if value[0] != '@' else key + "='" +
value for key, value in definition.iteritems()
])
plates = wk.walk(XPathAnalyzer(a))
for plate in plates:
c = Container(plate)
c.store()
infiles = glob.glob('imports/*.pdfx')
for filename in infiles:
s = etree.tostring(objectify.parse(filename), pretty_print=True)
# s = string.replace(s, '\\', '/')
#s = unicodedata.normalize("NFKD", s.encode('utf8'))
s = s.encode('ascii', 'ignore').encode('latin-1')
s = s.decode('utf-8', 'ignore')
s = s.replace('®', '(R)')
root = objectify.fromstring(
etree.tostring(
objectify.parse('E_PTT_BeamLocation_A12345678W_20140729_225738.xml')))
print etree.tostring(root, pretty_print=True)
# root.xpath('//Section/Data/Well/Multiple')
# root.xpath('//Section[@Name='Label1']/Data/Well/Multiple')
# root.xpath('//Section[@Name='Label1']/Data/Well/Multiple?pos=@MRW_Position')
# root.xpath('//Section[@Name='Label1']/Data/Well/Multiple/@MRW_Position')
wk = XMLWalker(root)
data = wk.walk(
XPathAnalyzer(
"//Section[@Name='Label1']/Data/Well?well=@Pos/Multiple?pos=@MRW_Position&value='/text()'"
))
print data
beams = {}
for d in data:
p = d['pos'].split(';')
if len(p) > 1:
if d['well'] not in beams:
beams[d['well']] = np.ones([15, 15]) * (-0.1)
beams[d['well']][int(p[0]), int(p[1])] = float(d['value'])
grayscale = " .:-=+*#%@"
