def _get_bpa_id(entry):
"""
Get or make BPA ID
"""
bpa_id, report = bpa_id_utils.get_bpa_id(entry.bpa_id, 'BASE', 'BASE')
if bpa_id is None:
logger.warning('Could not add entry in {}, row {}, BPA ID Invalid: {}'.format(entry.file_name, entry.row, report))
return None
return bpa_id
def get_base_sample(bpa_idx):
try:
idx = BPA_ID + bpa_idx.split('_')[0]
except ValueError:
return None
bpa_id, report = bpa_id_utils.get_bpa_id(idx, 'BASE', 'BASE', 'Created by BASE Amplicon ingestor')
if bpa_id is None:
return None
sample, _ = BASESample.objects.get_or_create(bpa_id=bpa_id)
return sample