def test_Annotation_get_aa_seq__snp():
ann = gff.Annotation(start=1, end=40, strand='+', phase=1)
seq = 'ACTG' * 10
assert ann.get_aa_seq(seq, start=None, snp=(1, 'C')) == sequence.translate_sequence(
ann.get_nuc_seq(seq, reverse=True, snp=(1, 'C')),
start=ann.phase,
reverse=False
)
def test_Annotation_get_aa_seq():
ann = gff.Annotation(start=1, end=40, strand='+', phase=0)
seq = 'ACTG' * 10
assert ann.get_aa_seq(seq) == sequence.translate_sequence(
ann.get_nuc_seq(seq, reverse=True),
start=0,
reverse=False
)
def test_translate_sequence_ne(seq, trl, start, tbl, reverse):
assert translate_sequence(seq, start=start, tbl=tbl,
reverse=reverse) != trl