def _build_mod_file(modfilename, output_dir=None, build_dir=None, modfile=None):
build_dir = LocMgr().get_default_mod_builddir() if not build_dir else build_dir
output_dir = LocMgr().get_default_mod_outdir() if not output_dir else output_dir
if SettingsMgr.simulator_is_verbose():
print " - Building: ", modfilename
modfilenamebase = os.path.basename(modfilename)
sofilenamebase = modfilenamebase.replace(".mod", ".so")
shutil.copyfile(modfilename, os.path.join(build_dir, modfilenamebase))
so_filename_output = os.path.join(output_dir, sofilenamebase)
# Move to new directory to build:
initial_cwd = os.getcwd()
os.chdir(build_dir)
so_filename_build_short = _build_modfile_local(mod_filename_short=modfilenamebase, modfile=modfile)
os.chdir(initial_cwd)
# CopyFile to output cell_location:
so_filename_build = os.path.join(build_dir, so_filename_build_short)
if so_filename_build != so_filename_output:
shutil.move(so_filename_build, so_filename_output)
return so_filename_output
def _build_mod_file(modfilename,
output_dir=None,
build_dir=None,
modfile=None):
build_dir = LocMgr().get_default_mod_builddir(
) if not build_dir else build_dir
output_dir = LocMgr().get_default_mod_outdir(
) if not output_dir else output_dir
if SettingsMgr.simulator_is_verbose():
print ' - Building: ', modfilename
modfilenamebase = os.path.basename(modfilename)
sofilenamebase = modfilenamebase.replace('.mod', '.so')
shutil.copyfile(modfilename, os.path.join(build_dir, modfilenamebase))
so_filename_output = os.path.join(output_dir, sofilenamebase)
# Move to new directory to build:
initial_cwd = os.getcwd()
os.chdir(build_dir)
so_filename_build_short = _build_modfile_local(
mod_filename_short=modfilenamebase, modfile=modfile)
os.chdir(initial_cwd)
# CopyFile to output cell_location:
so_filename_build = os.path.join(build_dir, so_filename_build_short)
if so_filename_build != so_filename_output:
shutil.move(so_filename_build, so_filename_output)
return so_filename_output
def _simple_exec(cmd, remaining):
print "Executing: %s %s" % (cmd, remaining)
output = subprocess.Popen(
[cmd + " " + remaining], shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE
).communicate()[0]
if SettingsMgr.simulator_is_verbose():
print output
return output
def _simple_exec(cmd, remaining):
print 'Executing: %s %s' % (cmd, remaining)
output = subprocess.Popen([cmd + ' ' + remaining],
shell=True,
stdout=subprocess.PIPE,
stderr=subprocess.PIPE).communicate()[0]
if SettingsMgr.simulator_is_verbose():
print output
return output
def _is_logging_active_and_ready(cls):
if cls._initialised_state == LogMgrState.Ready:
from morphforge.core.mgrs.settingsmgr import SettingsMgr
if not SettingsMgr.is_logging():
return False
return True
elif cls._initialised_state == LogMgrState.Configuring:
return False
elif cls._initialised_state == LogMgrState.Uninitialised:
cls.config()
return True
else:
raise ValueError()
def _simple_exec(cmd, remaining, err_ok=False):
print 'Executing: %s %s' % (cmd, remaining)
args = [cmd + ' ' + remaining]
proc = subprocess.Popen(args,
shell=True,
stdout=subprocess.PIPE,
stderr=subprocess.PIPE)
output,err = proc.communicate()
if not proc.returncode == 0 and err_ok!=True:
print output, err
raise ValueError(('Problem Building Mod-file!' + '\n %s '% args) + output)
if SettingsMgr.simulator_is_verbose():
print output, err
return output
def check_modfile_units(cls, modfilename):
output = _simple_exec(ModBuilderParams.modlunitpath, modfilename)
op_expected = """
model 1.1.1.1 1994/10/12 17:22:51
Checking units of %s""" % modfilename
if SettingsMgr.simulator_is_verbose():
print 'OP', output
# Check line by line:
for (line, line_expected) in zip(output.split('\n'),
op_expected.split('\n')):
if not line_expected.strip() == line.strip():
print 'ERROR ERROR ERROR WITH UNITS!!'
print 'Seen', line
print 'Expt', line_expected
def check_modfile_units(cls, modfilename):
output = _simple_exec(ModBuilderParams.modlunitpath, modfilename, err_ok=True)
op_expected = """
model 1.1.1.1 1994/10/12 17:22:51
Checking units of %s""" % modfilename
if SettingsMgr.simulator_is_verbose():
print 'OP', output
# Check line by line:
for (line, line_expected) in zip(output.split('\n'), op_expected.split('\n')):
if not line_expected.strip() == line.strip():
print 'ERROR ERROR ERROR WITH UNITS!!'
print 'Seen', line
print 'Expt', line_expected
assert False
def check_modfile_units(cls, modfilename):
output = _simple_exec(ModBuilderParams.modlunitpath, modfilename)
op_expected = (
"""
model 1.1.1.1 1994/10/12 17:22:51
Checking units of %s"""
% modfilename
)
if SettingsMgr.simulator_is_verbose():
print "OP", output
# Check line by line:
for (line, line_expected) in zip(output.split("\n"), op_expected.split("\n")):
if not line_expected.strip() == line.strip():
print "ERROR ERROR ERROR WITH UNITS!!"
print "Seen", line
print "Expt", line_expected
def _build_modfile_local(mod_filename_short, modfile=None):
print os.getcwd()
mod_file_basename = mod_filename_short.replace('.mod', '')
c_filename = mod_file_basename + '.c'
la_filename = mod_file_basename + '.la'
lo_filename = mod_file_basename + '.lo'
so_filename = mod_file_basename + '.so'
libs_dir = '.libs/'
# Check for some existing files:
#for gen_file in gen_files:
# if os.path.exists(gen_file):
# assert False, 'We never get here'
# LocMgr.BackupDirectory(gen_file)
c_filename = mod_file_basename + '.c'
output = _simple_exec(ModBuilderParams.nocmodlpath, mod_filename_short)
if not os.path.exists(c_filename):
print 'Failed to compile modfile. Error:'
print output, '\n'
assert False
# Add the extra registration function into our mod file:
new_register_func = """\n modl_reg(){ _%s_reg(); }""" \
% mod_file_basename
FileIO.append_to_file(new_register_func, c_filename)
# Compile the .c file -> .so:
compile_str = ModBuilderParams.get_compile_str(c_filename, lo_filename)
link_str = ModBuilderParams.get_link_str(lo_filename, la_filename)
if SettingsMgr.simulator_is_verbose():
print 'IN:', ModBuilderParams.libtoolpath,
print compile_str
print link_str
compile_flags = modfile.additional_compile_flags if modfile else ''
link_flags = modfile.additional_link_flags if modfile else ''
op1 = _simple_exec(
ModBuilderParams.libtoolpath,
ModBuilderParams.get_compile_str(
c_filename, lo_filename, additional_compile_flags=compile_flags))
op2 = _simple_exec(
ModBuilderParams.libtoolpath,
ModBuilderParams.get_link_str(lo_filename,
la_filename,
additional_link_flags=link_flags))
if SettingsMgr.simulator_is_verbose() or True:
print 'OP1:', op1
print 'OP2:', op2
# Copy the correct .so from the libDir to the build_dir:
shutil.move(os.path.join(libs_dir, mod_file_basename + '.so.0.0.0'),
so_filename)
# Clean up:
if True:
os.remove(c_filename)
os.remove(mod_filename_short)
for ext in ['.la', '.lo']:
os.remove(mod_file_basename + ext)
for ext in ['.la', '.lai', '.o', '.so', '.so.0']:
os.remove(os.path.join(libs_dir, mod_file_basename + ext))
os.rmdir(libs_dir)
return so_filename
def _build_modfile_local(mod_filename_short, modfile=None):
print os.getcwd()
mod_file_basename = mod_filename_short.replace(".mod", "")
c_filename = mod_file_basename + ".c"
la_filename = mod_file_basename + ".la"
lo_filename = mod_file_basename + ".lo"
so_filename = mod_file_basename + ".so"
libs_dir = ".libs/"
# Check for some existing files:
# for gen_file in gen_files:
# if os.path.exists(gen_file):
# assert False, 'We never get here'
# LocMgr.BackupDirectory(gen_file)
c_filename = mod_file_basename + ".c"
output = _simple_exec(ModBuilderParams.nocmodlpath, mod_filename_short)
if not os.path.exists(c_filename):
print "Failed to compile modfile. Error:"
print output, "\n"
assert False
# Add the extra registration function into our mod file:
new_register_func = """\n modl_reg(){ _%s_reg(); }""" % mod_file_basename
FileIO.append_to_file(new_register_func, c_filename)
# Compile the .c file -> .so:
compile_str = ModBuilderParams.get_compile_str(c_filename, lo_filename)
link_str = ModBuilderParams.get_link_str(lo_filename, la_filename)
if SettingsMgr.simulator_is_verbose():
print "IN:", ModBuilderParams.libtoolpath,
print compile_str
print link_str
compile_flags = modfile.additional_compile_flags if modfile else ""
link_flags = modfile.additional_link_flags if modfile else ""
op1 = _simple_exec(
ModBuilderParams.libtoolpath,
ModBuilderParams.get_compile_str(c_filename, lo_filename, additional_compile_flags=compile_flags),
)
op2 = _simple_exec(
ModBuilderParams.libtoolpath,
ModBuilderParams.get_link_str(lo_filename, la_filename, additional_link_flags=link_flags),
)
if SettingsMgr.simulator_is_verbose() or True:
print "OP1:", op1
print "OP2:", op2
# Copy the correct .so from the libDir to the build_dir:
shutil.move(os.path.join(libs_dir, mod_file_basename + ".so.0.0.0"), so_filename)
# Clean up:
if True:
os.remove(c_filename)
os.remove(mod_filename_short)
for ext in [".la", ".lo"]:
os.remove(mod_file_basename + ext)
for ext in [".la", ".lai", ".o", ".so", ".so.0"]:
os.remove(os.path.join(libs_dir, mod_file_basename + ext))
os.rmdir(libs_dir)
return so_filename
def _build_modfile_local(mod_filename_short, modfile=None):
print os.getcwd()
mod_file_basename = mod_filename_short.replace('.mod', '')
c_filename = mod_file_basename + '.c'
la_filename = mod_file_basename + '.la'
lo_filename = mod_file_basename + '.lo'
so_filename = mod_file_basename + '.so'
libs_dir = '.libs/'
c_filename = mod_file_basename + '.c'
output = _simple_exec(ModBuilderParams.nocmodlpath, mod_filename_short, err_ok=True)
if not os.path.exists(c_filename):
print 'Failed to compile modfile. Error:'
print output, '\n'
assert False
# Add the extra registration function into our mod file:
new_register_func = """\n modl_reg(){ _%s_reg(); }""" \
% mod_file_basename
FileIO.append_to_file(new_register_func, c_filename)
# Compile the .c file -> .so:
compile_str = ModBuilderParams.get_compile_str(c_filename, lo_filename)
link_str = ModBuilderParams.get_link_str(lo_filename, la_filename)
compile_flags = modfile.additional_compile_flags if modfile else ''
link_flags = modfile.additional_link_flags if modfile else ''
if SettingsMgr.simulator_is_verbose():
print 'IN:', ModBuilderParams.libtoolpath,
print compile_str
print link_str
op1 = _simple_exec(ModBuilderParams.libtoolpath, ModBuilderParams.get_compile_str(c_filename, lo_filename, additional_compile_flags=compile_flags))
op2 = _simple_exec(ModBuilderParams.libtoolpath, ModBuilderParams.get_link_str(lo_filename, la_filename, additional_link_flags=link_flags))
for filename in [c_filename, lo_filename, la_filename]:
if not os.path.exists(filename):
assert False, 'Error building mod-file!'
if SettingsMgr.simulator_is_verbose() or True:
print 'OP1:', op1
print 'OP2:', op2
# Copy the correct .so from the libDir to the build_dir:
shutil.move(
os.path.join(libs_dir, mod_file_basename + '.so.0.0.0'),
so_filename)
# Clean up:
if True:
os.remove(c_filename)
os.remove(mod_filename_short)
for ext in ['.la', '.lo']:
os.remove(mod_file_basename + ext)
for ext in ['.la', '.lai', '.o', '.so', '.so.0']:
os.remove(os.path.join(libs_dir, mod_file_basename + ext))
os.rmdir(libs_dir)
return so_filename
