def test_TrackBootstrap_outputs():
output_map = dict(tracked=dict(), )
outputs = TrackBootstrap.output_spec()
for key, metadata in output_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_TrackBootstrap_outputs():
output_map = dict(tracked=dict())
outputs = TrackBootstrap.output_spec()
for key, metadata in output_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_TrackBootstrap_inputs():
input_map = dict(
anisfile=dict(argstr="-anisfile %s"),
anisthresh=dict(argstr="-anisthresh %f"),
args=dict(argstr="%s"),
bgmask=dict(argstr="-bgmask %s"),
bsdatafiles=dict(argstr="-bsdatafile %s", mandatory=True),
curveinterval=dict(argstr="-curveinterval %f", requires=["curvethresh"]),
curvethresh=dict(argstr="-curvethresh %f"),
data_dims=dict(argstr="-datadims %s", units="voxels"),
environ=dict(nohash=True, usedefault=True),
gzip=dict(argstr="-gzip"),
ignore_exception=dict(nohash=True, usedefault=True),
in_file=dict(argstr="-inputfile %s", position=1),
inputdatatype=dict(argstr="-inputdatatype %s"),
inputmodel=dict(argstr="-inputmodel %s", usedefault=True),
interpolator=dict(argstr="-interpolator %s"),
inversion=dict(argstr="-inversion %s"),
ipthresh=dict(argstr="-ipthresh %f"),
iterations=dict(argstr="-iterations %d", units="NA"),
maxcomponents=dict(argstr="-maxcomponents %d", units="NA"),
numpds=dict(argstr="-numpds %d", units="NA"),
out_file=dict(argstr="-outputfile %s", genfile=True, position=-1),
output_root=dict(argstr="-outputroot %s", position=-1),
outputtracts=dict(argstr="-outputtracts %s"),
scheme_file=dict(argstr="-schemefile %s", mandatory=True),
seed_file=dict(argstr="-seedfile %s", position=2),
stepsize=dict(argstr="-stepsize %f", requires=["tracker"]),
terminal_output=dict(mandatory=True, nohash=True),
tracker=dict(argstr="-tracker %s", usedefault=True),
voxel_dims=dict(argstr="-voxeldims %s", units="mm"),
)
inputs = TrackBootstrap.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value
def test_TrackBootstrap_inputs():
input_map = dict(
anisfile=dict(argstr='-anisfile %s', ),
anisthresh=dict(argstr='-anisthresh %f', ),
args=dict(argstr='%s', ),
bgmask=dict(argstr='-bgmask %s', ),
bsdatafiles=dict(
argstr='-bsdatafile %s',
mandatory=True,
),
curveinterval=dict(
argstr='-curveinterval %f',
requires=['curvethresh'],
),
curvethresh=dict(argstr='-curvethresh %f', ),
data_dims=dict(
argstr='-datadims %s',
units='voxels',
),
environ=dict(
nohash=True,
usedefault=True,
),
gzip=dict(argstr='-gzip', ),
ignore_exception=dict(
nohash=True,
usedefault=True,
),
in_file=dict(
argstr='-inputfile %s',
position=1,
),
inputdatatype=dict(argstr='-inputdatatype %s', ),
inputmodel=dict(
argstr='-inputmodel %s',
usedefault=True,
),
interpolator=dict(argstr='-interpolator %s', ),
inversion=dict(argstr='-inversion %s', ),
ipthresh=dict(argstr='-ipthresh %f', ),
iterations=dict(
argstr='-iterations %d',
units='NA',
),
maxcomponents=dict(
argstr='-maxcomponents %d',
units='NA',
),
numpds=dict(
argstr='-numpds %d',
units='NA',
),
out_file=dict(
argstr='-outputfile %s',
genfile=True,
position=-1,
),
output_root=dict(
argstr='-outputroot %s',
position=-1,
),
outputtracts=dict(argstr='-outputtracts %s', ),
scheme_file=dict(
argstr='-schemefile %s',
mandatory=True,
),
seed_file=dict(
argstr='-seedfile %s',
position=2,
),
stepsize=dict(
argstr='-stepsize %f',
requires=['tracker'],
),
terminal_output=dict(nohash=True, ),
tracker=dict(
argstr='-tracker %s',
usedefault=True,
),
voxel_dims=dict(
argstr='-voxeldims %s',
units='mm',
),
)
inputs = TrackBootstrap.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value
def test_TrackBootstrap_inputs():
input_map = dict(bsdatafiles=dict(mandatory=True,
argstr='-bsdatafile %s',
),
iterations=dict(units='NA',
argstr='-iterations %d',
),
numpds=dict(units='NA',
argstr='-numpds %d',
),
data_dims=dict(units='voxels',
argstr='-datadims %s',
),
outputtracts=dict(argstr='-outputtracts %s',
),
scheme_file=dict(mandatory=True,
argstr='-schemefile %s',
),
seed_file=dict(position=2,
argstr='-seedfile %s',
),
maxcomponents=dict(units='NA',
argstr='-maxcomponents %d',
),
in_file=dict(position=1,
mandatory=True,
argstr='-inputfile %s',
),
ipthresh=dict(argstr='-ipthresh %f',
),
voxel_dims=dict(units='mm',
argstr='-voxeldims %s',
),
output_root=dict(position=-1,
argstr='-outputroot %s',
),
ignore_exception=dict(nohash=True,
usedefault=True,
),
args=dict(argstr='%s',
),
inputmodel=dict(usedefault=True,
argstr='-inputmodel %s',
),
terminal_output=dict(mandatory=True,
nohash=True,
),
anisfile=dict(argstr='-anisfile %s',
),
inversion=dict(argstr='-inversion %s',
),
out_file=dict(position=-1,
genfile=True,
argstr='-outputfile %s',
),
curvethresh=dict(argstr='-curvethresh %f',
),
inputdatatype=dict(argstr='-inputdatatype %s',
),
environ=dict(nohash=True,
usedefault=True,
),
gzip=dict(argstr='-gzip',
),
bgmask=dict(argstr='-bgmask %s',
),
anisthresh=dict(argstr='-anisthresh %f',
),
)
inputs = TrackBootstrap.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value
