Exemplo n.º 1
0
    ('chr3R', (0, 27905053)),
    ('chr4', (0, 1351857)),
    ('chrX', (0, 22422827)),
    ('chr2LHet', (0, 368872)),
    ('chr2RHet', (0, 3288761)),
    ('chr3LHet', (0, 2555491)),
    ('chr3RHet', (0, 2517507)),
    ('chrM', (0, 19517)),
    ('chrU', (0, 10049037)),
    ('chrUextra', (0, 29004656)),
    ('chrXHet', (0, 204112)),
    ('chrYHet', (0, 347038)),
))

# No chrUextra or chrM
dm3.default = OrderedDict()
for chrom, size in dm3.items():
    if chrom in ['chrUextra', 'chrM']:
        continue
    dm3.default[chrom] = size

# No chrU*, chr*Het, or chrM
dm3.euchromatic = OrderedDict()
for chrom, size in dm3.default.items():
    if 'chrU' in chrom:
        continue
    if 'Het' in chrom:
        continue
    dm3.euchromatic[chrom] = size

Exemplo n.º 2
0
    ('chr3R', (0, 27905053)),
    ('chr4', (0, 1351857)),
    ('chrX', (0, 22422827)),
    ('chr2LHet', (0, 368872)),
    ('chr2RHet', (0, 3288761)),
    ('chr3LHet', (0, 2555491)),
    ('chr3RHet', (0, 2517507)),
    ('chrM', (0, 19517)),
    ('chrU', (0, 10049037)),
    ('chrUextra', (0, 29004656)),
    ('chrXHet', (0, 204112)),
    ('chrYHet', (0, 347038)),
))

# No chrUextra or chrM
dm3.default = OrderedDict()
for chrom, size in dm3.items():
    if chrom in ['chrUextra', 'chrM']:
        continue
    dm3.default[chrom] = size

# No chrU*, chr*Het, or chrM
dm3.euchromatic = OrderedDict()
for chrom, size in dm3.default.items():
    if 'chrU' in chrom:
        continue
    if 'Het' in chrom:
        continue
    dm3.euchromatic[chrom] = size

mm9 = OrderedDict((