def _overlap_segment(expected, observed, start=None, end=None):
tp, fp, fn = 0, 0, 0
observed_copy = observed.copy()
for expected_seq in expected:
found = False
for observed_seq in observed:
if _overlap(expected_seq, observed_seq):
if not found:
tp += 1
found = True
if observed_seq in observed_copy:
observed_copy.remove(observed_seq)
if not found:
fn += 1
fp += len(observed_copy)
return None, fp, fn, tp
def test__overlap_false(expected, observed):
expected_false = expected["false"]
observed_false = observed["false"]
assert not all(
_overlap(ex, ob) for ex, ob in zip(expected_false, observed_false))
def test__overlap_true(expected, observed):
expected_true = expected["true"]
observed_true = observed["true"]
assert all(
_overlap(ex, ob) for ex, ob in zip(expected_true, observed_true))