def ple_me(request):
if request.method == 'POST':
form = SequenceForm(request.POST)
if form.is_valid():
import trident.parser as TP
from trident import FastaError
errormsg = None
try:
browser_name = None
genome = None
if "genomes" in form.cleaned_data and form.cleaned_data["genomes"]:
species = form.cleaned_data["genomes"]
if species != "null":
from tridentdb.models import Genome
g = Genome.objects.get(genome_ver = species)
genome = g.genome_ver
browser_name = g.browser_name
ple_output = ple_interface.run_ple(form.cleaned_data)
parser = TP.Parser(ple_output)
result_list = ple_to_resultlist(parser, browser_name, genome)
except FastaError as fe:
errormsg = fe.message
result_list = []
return render_to_response('resultdetail.html',{'latest_result_list': result_list,'error_message': errormsg})
else:
form = SequenceForm(default_nts)
return render_to_response('ple/sequence_form.html', {'form': form}, context_instance=RequestContext(request))
def ple_me(request):
if request.method == 'POST':
form = SequenceForm(request.POST)
if form.is_valid():
import trident.parser as TP
from trident import FastaError
errormsg = None
try:
browser_name = None
genome = None
if "genomes" in form.cleaned_data and form.cleaned_data[
"genomes"]:
species = form.cleaned_data["genomes"]
if species != "null":
from tridentdb.models import Genome
g = Genome.objects.get(genome_ver=species)
genome = g.genome_ver
browser_name = g.browser_name
ple_output = ple_interface.run_ple(form.cleaned_data)
parser = TP.Parser(ple_output)
result_list = ple_to_resultlist(parser, browser_name, genome)
except FastaError as fe:
errormsg = fe.message
result_list = []
return render_to_response('resultdetail.html', {
'latest_result_list': result_list,
'error_message': errormsg
})
else:
form = SequenceForm(default_nts)
return render_to_response('ple/sequence_form.html', {'form': form},
context_instance=RequestContext(request))
def ple_them(request,mirna,dna):
import trident.parser as TP
from trident import FastaError
form_dict = {"nt1": mirna, "nt2": dna, "long_format": 0, "use_miranda": 0}
errormsg = None
try:
ple_output = ple_interface.run_ple(form_dict)
parser = TP.Parser(ple_output)
result_list = ple_to_resultlist(parser)
except FastaError as fe:
errormsg = fe.message
result_list = []
return render_to_response('resultdetail.html',{'latest_result_list': result_list, 'error_message': errormsg})
def json_ple_them(request,mirna,dna):
from django.utils import simplejson
import trident.parser as TP
from trident import FastaError
form_dict = {"nt1": mirna, "nt2": dna, "long_format": 0, "use_miranda": 0}
errormsg = None
try:
ple_output = ple_interface.run_ple(form_dict)
parser = TP.Parser(ple_output)
result_list = ple_to_resultlist(parser)
except FastaError as fe:
errormsg = fe.message
result_list = []
return HttpResponse(simplejson.dumps({'latest_result_list': result_list, 'error_message': errormsg}))
def ple_them(request, mirna, dna):
import trident.parser as TP
from trident import FastaError
form_dict = {"nt1": mirna, "nt2": dna, "long_format": 0, "use_miranda": 0}
errormsg = None
try:
ple_output = ple_interface.run_ple(form_dict)
parser = TP.Parser(ple_output)
result_list = ple_to_resultlist(parser)
except FastaError as fe:
errormsg = fe.message
result_list = []
return render_to_response('resultdetail.html', {
'latest_result_list': result_list,
'error_message': errormsg
})
def json_ple_them(request, mirna, dna):
from django.utils import simplejson
import trident.parser as TP
from trident import FastaError
form_dict = {"nt1": mirna, "nt2": dna, "long_format": 0, "use_miranda": 0}
errormsg = None
try:
ple_output = ple_interface.run_ple(form_dict)
parser = TP.Parser(ple_output)
result_list = ple_to_resultlist(parser)
except FastaError as fe:
errormsg = fe.message
result_list = []
return HttpResponse(
simplejson.dumps({
'latest_result_list': result_list,
'error_message': errormsg
}))
