def test_first_feature_data_retained(self):
d1 = pd.Series(['ACGT', 'ACCT'], index=['f1', 'f2'])
d2 = pd.Series(['ACGAAA', 'ACCA'], index=['f1', 'f3'])
obs = _merge_feature_data([d1, d2])
exp = pd.Series(['ACGT', 'ACCT', 'ACCA'], index=['f1', 'f2', 'f3'])
pdt.assert_series_equal(obs, exp)
# swapping input order changes f1 data
obs = _merge_feature_data([d2, d1])
exp = pd.Series(['ACGAAA', 'ACCT', 'ACCA'], index=['f1', 'f2', 'f3'])
pdt.assert_series_equal(obs, exp)
def test_first_feature_data_retained(self):
d1 = pd.Series(['ACGT', 'ACCT'], index=['f1', 'f2'])
d2 = pd.Series(['ACGAAA', 'ACCA'], index=['f1', 'f3'])
obs = _merge_feature_data([d1, d2])
exp = pd.Series(['ACGT', 'ACCT', 'ACCA'], index=['f1', 'f2', 'f3'])
pdt.assert_series_equal(obs, exp)
# swapping input order changes f1 data
obs = _merge_feature_data([d2, d1])
exp = pd.Series(['ACGAAA', 'ACCT', 'ACCA'], index=['f1', 'f2', 'f3'])
pdt.assert_series_equal(obs, exp)
def test_multiple_overlapping_feature_ids_order_maintained(self):
d1 = pd.Series(['ACGT', 'ACCT'], index=['f1', 'f2'])
d2 = pd.Series(['ACGAAA', 'ACCA'], index=['f1', 'f3'])
d3 = pd.Series(['AGGA', 'ATAT'], index=['f3', 'f4'])
obs = _merge_feature_data([d1, d2, d3])
exp = pd.Series(['ACGT', 'ACCT', 'ACCA', 'ATAT'],
index=['f1', 'f2', 'f3', 'f4'])
pdt.assert_series_equal(obs, exp)
# swapping input order changes f1 and f3
obs = _merge_feature_data([d3, d2, d1])
exp = pd.Series(['ACGAAA', 'ACCT', 'AGGA', 'ATAT'],
index=['f1', 'f2', 'f3', 'f4'])
pdt.assert_series_equal(obs, exp)
def test_multiple_overlapping_feature_ids_order_maintained(self):
d1 = pd.Series(['ACGT', 'ACCT'], index=['f1', 'f2'])
d2 = pd.Series(['ACGAAA', 'ACCA'], index=['f1', 'f3'])
d3 = pd.Series(['AGGA', 'ATAT'], index=['f3', 'f4'])
obs = _merge_feature_data([d1, d2, d3])
exp = pd.Series(['ACGT', 'ACCT', 'ACCA', 'ATAT'],
index=['f1', 'f2', 'f3', 'f4'])
pdt.assert_series_equal(obs, exp)
# swapping input order changes f1 and f3
obs = _merge_feature_data([d3, d2, d1])
exp = pd.Series(['ACGAAA', 'ACCT', 'AGGA', 'ATAT'],
index=['f1', 'f2', 'f3', 'f4'])
pdt.assert_series_equal(obs, exp)
def test_valid_non_overlapping_feature_ids(self):
d1 = pd.Series(['ACGT', 'ACCT'], index=['f1', 'f2'])
d2 = pd.Series(['ACGT', 'ACCA'], index=['f3', 'f4'])
obs = _merge_feature_data([d1, d2])
exp = pd.Series(['ACGT', 'ACCT', 'ACGT', 'ACCA'],
index=['f1', 'f2', 'f3', 'f4'])
pdt.assert_series_equal(obs, exp)
def test_valid_non_overlapping_feature_ids(self):
d1 = pd.Series(['ACGT', 'ACCT'], index=['f1', 'f2'])
d2 = pd.Series(['ACGT', 'ACCA'], index=['f3', 'f4'])
obs = _merge_feature_data([d1, d2])
exp = pd.Series(['ACGT', 'ACCT', 'ACGT', 'ACCA'],
index=['f1', 'f2', 'f3', 'f4'])
pdt.assert_series_equal(obs, exp)
def test_merge_single(self):
d = pd.Series(['ACGT', 'ACCT'], index=['f1', 'f2'])
obs = _merge_feature_data([d])
pdt.assert_series_equal(obs, d)
def test_merge_single(self):
d = pd.Series(['ACGT', 'ACCT'], index=['f1', 'f2'])
obs = _merge_feature_data([d])
pdt.assert_series_equal(obs, d)
