def save_result(self, event_id, testcase_id, username, hwname, smolt, result, bugs, comment):
"""Saves the validated data to ResultsDB."""
if hwname is not None:
hwname = hwname.encode('ascii', 'xmlcharrefreplace')
if result is not None:
result = result.encode('ascii', 'xmlcharrefreplace')
filled = self.__update_profile_cookies(username, smolt, hwname)
# This cookie is used for showing the "DONE" status message in the testcase
# grid on the Event page
if testcase_id not in filled:
filled[testcase_id] = result
response.set_cookie("filled", json.dumps(filled))
q = DBSession.query(db.Testcase)
q = q.filter(db.Testcase.id == testcase_id)
tc = q.one()
# Prepares the data for ResultsDB storage
q = DBSession.query(db.Event)
q = q.filter(db.Event.id == event_id)
event = q.one()
job_id = event.resultsdb_job
# normalize the empty smolt url to empty string
if smolt is None or smolt.strip() == "":
smolt = ""
# Preparing the data for ResultsDB
# Set "extra data" (from the ResultsDB's POW)
# The result is stored here, so we can easily work with the result, without needing
# to distinguish between the "tc" and "txt" type in the results view.
keyval_pairs = dict(username=username, hwname=hwname, smolt=smolt, result=result, tctype = tc.type.name)
# Some ResultsDB fields, reasonably used, so we don't need to create that much extra-data fields
if comment is not None:
summary = comment.encode('ascii', 'xmlcharrefreplace')
else:
summary = comment
highlights = bugs
# For the txt testcase, we set the ResultsDB result to PASSED
# tc type testcase already has a subset of ResultsDB valid results.
if tc.type.name == 'txt':
result = "PASSED"
# Store the data into ResultsDB
tr_id = self.rdb.start_testrun(tc.url, job_id)
retval = self.rdb.end_testrun(tr_id, result, tc.url, keyval_pairs, summary = summary, highlights = highlights)
if retval == 0:
flash("Result for '%s' sucessfully saved" % tc.name)
else:
flash("Result for '%s' could not be saved (ResultsDB error)" % tc.name, 'error')
#FIXME: change model, so the event-category is one-to-many instead of many-to-many
redirect(url('show_event', dict(event_id = event.id)))
def forget(controller_result, raised=None):
"""
Check if the form's inputs can be forgotten, and set the cookie to forget if so.
:param res: the result of the controller action
:param raised: any error (redirect or exception) raised by the controller action
"""
if _ok_to_forget(response, controller_result, raised):
response.set_cookie('memorable_forget', request.path)
def forget(controller_result, raised=None):
"""
Check if the form's inputs can be forgotten, and set the cookie to forget if so.
:param res: the result of the controller action
:param raised: any error (redirect or exception) raised by the controller action
"""
if _ok_to_forget(response, controller_result, raised):
response.set_cookie('memorable_forget', request.path)
def index(self, came_from='/'):
'''
Redirect user on tequila page in order to log him
'''
if tg.config.get('authentication.disable').lower() in ['t', 'true']:
print constants.admin_user_email()
environ = request.environ
authentication_plugins = environ['repoze.who.plugins']
identifier = authentication_plugins['ticket']
secret = identifier.secret
cookiename = identifier.cookie_name
remote_addr = environ['REMOTE_ADDR']
user = DBSession.query(User).filter(
User.email == constants.admin_user_email()).first()
admins = tg.config.get('admin.mails')
group_admins = DBSession.query(Group).filter(
Group.id == constants.group_admins_id).first()
if user.email in admins:
user not in group_admins.users and group_admins.users.append(
user)
else:
user in group_admins.users and group_admins.users.remove(user)
DBSession.flush()
userdata = "%s|%s" % (user.id, user in group_admins.users)
ticket = auth_tkt.AuthTicket(secret,
user.email,
remote_addr,
tokens=token,
user_data=userdata,
time=None,
cookie_name=cookiename,
secure=True)
val = ticket.cookie_value()
# set it in the cookies
response.set_cookie(cookiename,
value=val,
max_age=None,
path='/',
domain=None,
secure=False,
httponly=False,
comment=None,
expires=None,
overwrite=False)
raise redirect(came_from)
u = resolve_relative_url(url(), request.environ)
res = tequila.create_request(u + '/login/auth', 'tequila.epfl.ch')
raise redirect(
'https://tequila.epfl.ch/cgi-bin/tequila/requestauth?request' +
res)
def __call__(self, message, status=None,
overwrite=False,
**extra_payload):
if response is None:
raise ValueError("Must provide a response object or "
"configure a callable that provides one")
payload = []
if not overwrite and request:
try:
# Get payload, if already set before
payload = request.environ['webflash.payload']
payload = json.loads(url_unquote(payload))
log.debug("Got payload from environ %d", id(request.environ))
if isinstance(payload, dict):
log.debug('Upgrading old-style payload...')
payload = [payload]
except:
# No previous payload set before
pass
payload.append(
dict(
# Force the message to be unicode so lazystrings, etc... are coerced
message=unicode_text(message),
status=status or self.default_status,
**extra_payload
))
payload = url_quote(json.dumps(payload))
if request:
# Save the payload in environ too in case JavaScript is not being
# used and the message is being displayed in the same request.
request.environ['webflash.payload'] = payload
log.debug("Setting payload in environ %d", id(request.environ))
log.debug("Setting payload in cookie")
response.set_cookie(self.cookie_name, payload)
if len(response.headers['Set-Cookie']) > 4096:
raise ValueError('Flash value is too long (cookie would be >4k)')
def __update_profile_cookies(self, username, smolt, hwname):
# Stores the last values of username/smolt/hwname from cookies
username_orig = request.cookies.get('username', None)
smolt_orig = request.cookies.get('smolt', None)
hwname_orig = request.cookies.get('hwname', None)
filled = json.loads(request.cookies.get('filled', "{}"))
# Sets new cookie values for username and smolt
response.set_cookie("username", username)
response.set_cookie("smolt", smolt)
response.set_cookie("hwname", hwname)
if username_orig != username or smolt_orig != smolt or hwname_orig != hwname:
filled = {}
response.set_cookie("filled", json.dumps(filled))
return filled
def index(self, came_from='/'):
'''
Redirect user on tequila page in order to log him
'''
if tg.config.get('authentication.disable').lower() in ['t', 'true']:
print constants.admin_user_email()
environ = request.environ
authentication_plugins = environ['repoze.who.plugins']
identifier = authentication_plugins['ticket']
secret = identifier.secret
cookiename = identifier.cookie_name
remote_addr = environ['REMOTE_ADDR']
user = DBSession.query(User).filter(User.email == constants.admin_user_email()).first()
admins = tg.config.get('admin.mails')
group_admins = DBSession.query(Group).filter(Group.id == constants.group_admins_id).first()
if user.email in admins:
user not in group_admins.users and group_admins.users.append(user)
else:
user in group_admins.users and group_admins.users.remove(user)
DBSession.flush()
userdata = "%s|%s" % (user.id, user in group_admins.users)
ticket = auth_tkt.AuthTicket(
secret, user.email, remote_addr, tokens=token,
user_data=userdata, time=None, cookie_name=cookiename,
secure=True)
val = ticket.cookie_value()
# set it in the cookies
response.set_cookie(
cookiename, value=val, max_age=None, path='/', domain=None, secure=False,
httponly=False, comment=None, expires=None, overwrite=False)
raise redirect(came_from)
u = resolve_relative_url(url(), request.environ)
res = tequila.create_request(u + '/login/auth', 'tequila.epfl.ch')
raise redirect('https://tequila.epfl.ch/cgi-bin/tequila/requestauth?request' + res)
def save_language(lang):
_language = config.get('app.language_cookie', 'sp_language')
response.set_cookie(_language, value=lang, max_age=60*60*24*30*365) # 1 year
def auth(self, came_from='/', **kw):
'''
Fetch user back from tequila.
Validate the key from tequila.
Log user.
'''
if not 'key' in kw:
raise redirect(came_from)
# take parameters
key = kw.get('key')
environ = request.environ
authentication_plugins = environ['repoze.who.plugins']
identifier = authentication_plugins['ticket']
secret = identifier.secret
cookiename = identifier.cookie_name
remote_addr = environ['REMOTE_ADDR']
# get user
principal = tequila.validate_key(key, 'tequila.epfl.ch')
if principal is None:
raise redirect('./login')
tmp_user = self.build_user(principal)
mail = tmp_user.email
# log or create him
user = DBSession.query(User).filter(
User.email == tmp_user.email).first()
if user is None:
user_group = DBSession.query(Group).filter(
Group.id == constants.group_users_id).first()
user_group.users.append(tmp_user)
DBSession.add(tmp_user)
DBSession.flush()
#transaction.commit()
user = DBSession.query(User).filter(User.email == mail).first()
flash('Your account has been created')
DBSession.flush()
self.build_circles_with_user(tmp_user, principal)
DBSession.flush()
#transaction.commit()
elif user.name == constants.tmp_user_name:
user.name = tmp_user.name
user.firstname = tmp_user.firstname
user._set_date(datetime.datetime.now())
#user_group = DBSession.query(Group).filter(Group.id == constants.group_users_id).first()
#user_group.users.append(tmp_user)
flash('Your account has been created')
DBSession.flush()
self.build_circles_with_user(tmp_user, principal, user)
DBSession.flush()
#transaction.commit()
else:
flash('Welcome back', 'notice')
self.check_circles_with_user(user, principal)
# look if an user is admin or not
admins = tg.config.get('admin.mails')
group_admins = DBSession.query(Group).filter(
Group.id == constants.group_admins_id).first()
if user.email in admins:
user not in group_admins.users and group_admins.users.append(user)
else:
user in group_admins.users and group_admins.users.remove(user)
DBSession.flush()
# create the authentication ticket
user = DBSession.query(User).filter(User.email == mail).first()
userdata = "%s|%s" % (user.id, user in group_admins.users)
ticket = auth_tkt.AuthTicket(secret,
user.email,
remote_addr,
tokens=token,
user_data=userdata,
time=None,
cookie_name=cookiename,
secure=True)
val = ticket.cookie_value()
# set it in the cookies
response.set_cookie(cookiename,
value=val,
max_age=None,
path='/',
domain=None,
secure=False,
httponly=False,
comment=None,
expires=None,
overwrite=False)
transaction.commit()
raise redirect(came_from)
def set_language(self, languageid, came_from=url('/')):
"""Set language cookie"""
language = DBSession.query(Language).get(languageid.decode())
response.set_cookie('lang', language.id)
flash('%s %s' % (_('Preferred language set to:'), language.name))
redirect(came_from)
def auth(self, came_from='/', **kw):
'''
Fetch user back from tequila.
Validate the key from tequila.
Log user.
'''
if not 'key' in kw:
raise redirect(came_from)
# take parameters
key = kw.get('key')
environ = request.environ
authentication_plugins = environ['repoze.who.plugins']
identifier = authentication_plugins['ticket']
secret = identifier.secret
cookiename = identifier.cookie_name
remote_addr = environ['REMOTE_ADDR']
# get user
principal = tequila.validate_key(key, 'tequila.epfl.ch')
if principal is None:
raise redirect('./login')
tmp_user = self.build_user(principal)
mail = tmp_user.email
# log or create him
user = DBSession.query(User).filter(User.email == tmp_user.email).first()
if user is None:
user_group = DBSession.query(Group).filter(Group.id == constants.group_users_id).first()
user_group.users.append(tmp_user)
DBSession.add(tmp_user)
DBSession.flush()
#transaction.commit()
user = DBSession.query(User).filter(User.email == mail).first()
flash('Your account has been created')
DBSession.flush()
self.build_circles_with_user(tmp_user, principal)
DBSession.flush()
#transaction.commit()
elif user.name == constants.tmp_user_name:
user.name = tmp_user.name
user.firstname = tmp_user.firstname
user._set_date(datetime.datetime.now())
#user_group = DBSession.query(Group).filter(Group.id == constants.group_users_id).first()
#user_group.users.append(tmp_user)
flash('Your account has been created')
DBSession.flush()
self.build_circles_with_user(tmp_user, principal, user)
DBSession.flush()
#transaction.commit()
else:
flash('Welcome back', 'notice')
self.check_circles_with_user(user, principal)
# look if an user is admin or not
admins = tg.config.get('admin.mails')
group_admins = DBSession.query(Group).filter(Group.id == constants.group_admins_id).first()
if user.email in admins:
user not in group_admins.users and group_admins.users.append(user)
else:
user in group_admins.users and group_admins.users.remove(user)
DBSession.flush()
# create the authentication ticket
user = DBSession.query(User).filter(User.email == mail).first()
userdata = "%s|%s" % (user.id, user in group_admins.users)
ticket = auth_tkt.AuthTicket(
secret, user.email, remote_addr, tokens=token,
user_data=userdata, time=None, cookie_name=cookiename,
secure=True)
val = ticket.cookie_value()
# set it in the cookies
response.set_cookie(
cookiename,
value=val,
max_age=None,
path='/',
domain=None,
secure=False,
httponly=False,
comment=None,
expires=None,
overwrite=False)
transaction.commit()
raise redirect(came_from)
def save_language(lang):
_language = config.get('app.language_cookie', 'sp_language')
response.set_cookie(_language, value=lang,
max_age=60 * 60 * 24 * 30 * 365) # 1 year
def auth(self, came_from='/', **kw):
'''
Fetch user back from tequila.
Validate the key from tequila.
Log user.
'''
if not kw.has_key('key'):
raise redirect(came_from)
# take parameters
key = kw.get('key')
environ = request.environ
authentication_plugins = environ['repoze.who.plugins']
identifier = authentication_plugins['ticket']
secret = identifier.secret
cookiename = identifier.cookie_name
remote_addr = environ['REMOTE_ADDR']
# get user
principal = tequila.validate_key(key, 'tequila.epfl.ch')
if principal is None:
raise redirect('./login')
#in case of user gets several labs
try:
if session["first_passage"] == False:
#second passage
tmp_user = session["tmp_user"]
tmp_lab = session['tmp_lab']
except:
#first passage
session["first_passage"] = True
session["principal_tequila"] = principal
session.save()
tmp_user, tmp_lab = self.build_user(principal)
try:
mail = tmp_user.email
except:
flash("Sorry, you've been disconnected. You can try to relog yourself now", 'error')
raise redirect('/login/out')
# log or create him
user = DBSession.query(User).filter(User.email == tmp_user.email).first()
if user is None:
user_group = DBSession.query(Group).filter(Group.name == gl.group_users).first()
user_group.users.append(tmp_user)
DBSession.add(tmp_user)
DBSession.flush()
user = DBSession.query(User).filter(User.email == mail).first()
flash(u'Your account has been created %s' % (user.firstname + ' ' + user.name, ))
DBSession.flush()
print "######################"
print "key user :"******"######################"
print "key user :"******"######################"
print "key user :"******"lab created : ", lab
else:
if lab not in user.labs:
lab.users.append(user)
DBSession.flush()
print "lab existing : ", lab
#create attributs / check existing attributs
attributs = DBSession.query(Attributs).filter(Attributs.lab_id == lab.id).all()
if len(attributs) == 0:
attributs = None
lab_id = lab.id
#parsing "unit".ini
config = ConfigParser.RawConfigParser()
config.read(path_conf_unit(lab.name))
list_sample_att = (config.get('samples_attributs:main', 'keys')).split(',')
list_sample_hiding = (config.get('samples_hiding:main', 'keys')).split(',')
if len(list_sample_hiding) == 1 and list_sample_hiding[0] == '':
list_sample_hiding = ''
list_measurement_att = (config.get('meas_attributs:main', 'keys')).split(',')
list_meas_hiding = (config.get('meas_hiding:main', 'keys')).split(',')
if len(list_meas_hiding) == 1 and list_meas_hiding[0] == '':
list_meas_hiding = ''
list_searchable = (config.get('searchable_attributs:main', 'keys')).split(',')
list_deprecated = (config.get('deprecated_attributs:main', 'keys')).split(',')
dict_att_values_sample = {}
dict_att_values_meas = {}
dict_widgets_sample_att = {}
dict_widgets_meas_att = {}
dict_hiding_s_att = {}
dict_hiding_m_att = {}
for x in list_sample_att:
dict_att_values_sample[x] = (config.get('samples_attributs:' + x, x)).split(',')
dict_widgets_sample_att[x] = (config.get('samples_attributs:' + x, 'widget')).split(',')
for x in list_measurement_att:
dict_att_values_meas[x] = (config.get('meas_attributs:' + x, x)).split(',')
dict_widgets_meas_att[x] = (config.get('meas_attributs:' + x, 'widget')).split(',')
#to build the search page
search_fields_to_display = (config.get('search_grid_fields:main', 'keys')).split(',')
session["search_grid_fields"] = search_fields_to_display
#hidingradiobutton lists
#samples
if isinstance(list_sample_hiding, list):
for x in list_sample_hiding:
dic_mapping = {}
list_possibilities = (config.get('samples_attributs:' + x, x)).split(',')
for p in list_possibilities:
attribs_by_poss = (config.get('samples_attributs:' + x, p + "_mapping")).split(',')
dic_mapping[p] = attribs_by_poss
dict_hiding_s_att[x] = dic_mapping
if len(dict_hiding_s_att.keys()) > 0:
session["hiding_sample"] = dict_hiding_s_att
else:
session["hiding_sample"] = {}
#measurements
if isinstance(list_meas_hiding, list):
for x in list_meas_hiding:
dic_mapping = {}
list_possibilities = (config.get('meas_attributs:' + x, x)).split(',')
for p in list_possibilities:
attribs_by_poss = (config.get('meas_attributs:' + x, p + "_mapping")).split(',')
dic_mapping[p] = attribs_by_poss
dict_hiding_m_att[x] = dic_mapping
if len(dict_hiding_m_att.keys()) > 0:
session["hiding_meas"] = dict_hiding_m_att
else:
session["hiding_meas"] = {}
session.save()
#creating fixed values list
list_fixed_values_samples = []
list_fixed_values_meas = []
fixed_value_case = ['singleselectfield', 'multiselectfield', 'hiding_singleselectfield', 'hiding_multiselectfield']
for fix_s in list_sample_att:
for i in dict_att_values_sample[fix_s]:
if i != "None":
if fix_s not in list_fixed_values_samples:
list_fixed_values_samples.append(fix_s)
for fix_m in list_measurement_att:
for i in dict_att_values_meas[fix_m]:
if i != "None":
if fix_m not in list_fixed_values_meas:
list_fixed_values_meas.append(fix_m)
print list_fixed_values_samples, "<--- fixed sample"
print list_fixed_values_meas, "<---- fixed meas"
if attributs is None:
#########################################
###### creating samples attributs #######
#########################################
for s in list_sample_att:
#TODO virer cast str
widget = str(dict_widgets_sample_att[s])
owner_widget = "sample"
attribut = self.build_attribut(s, lab_id, list_fixed_values_samples, list_searchable, list_deprecated, widget, owner_widget)
DBSession.add(attribut)
DBSession.flush()
if attribut.fixed_value == False:
#if Attribut do not get fixed values
att_value = self.build_None_attribut_value(attribut.id)
DBSession.add(att_value)
DBSession.flush()
#########################################
#### creating measurements attributs ####
#########################################
for m in list_measurement_att:
widget = str(dict_widgets_meas_att[m])
owner_widget = "measurement"
attribut = self.build_attribut(m, lab_id, list_fixed_values_meas, list_searchable, list_deprecated, widget, owner_widget)
DBSession.add(attribut)
DBSession.flush()
if attribut.fixed_value == False:
#if Attribut do not get fixed values
att_value = self.build_None_attribut_value(attribut.id)
DBSession.add(att_value)
DBSession.flush()
#########################################
####### creating attributs values #######
#########################################
####### for samples #######
#########################################
dict_fixed_values_samples = {}
list_attributs_samples_values = self.build_attribut_value('samples_attributs:', lab_id, dict_fixed_values_samples, list_fixed_values_samples, config)
for att_v in list_attributs_samples_values:
DBSession.add(att_v)
DBSession.flush()
#########################################
###### for measurements #######
#########################################
dict_fixed_values_meas = {}
list_attributs_meas_values = self.build_attribut_value('meas_attributs:', lab_id, dict_fixed_values_meas, list_fixed_values_meas, config)
for att_v in list_attributs_meas_values:
DBSession.add(att_v)
DBSession.flush()
#check if there is a new key (or several...) in the config file of the lab
else:
list_existant_keys = []
print list_searchable, "-------------searchable"
for k in attributs:
list_existant_keys.append(str(k.key))
for att_s in list_sample_att:
att_s = unicode(att_s)
if att_s not in list_existant_keys:
#########################################
###### creating samples attributs #######
#########################################
widget = str(dict_widgets_sample_att[att_s])
owner_widget = "sample"
new_sample_attribut = self.build_attribut(att_s, lab_id, list_fixed_values_samples, list_searchable, list_deprecated, widget, owner_widget)
print new_sample_attribut
DBSession.add(new_sample_attribut)
DBSession.flush()
if new_sample_attribut.fixed_value == False:
#if Attribut do not get fixed values
att_value = self.build_None_attribut_value(new_sample_attribut.id)
DBSession.add(att_value)
DBSession.flush()
#########################################
####### creating attributs values #######
#########################################
####### for samples #######
#########################################
dict_fixed_values_samples = {}
list_attributs_samples_values = self.build_attribut_value('samples_attributs:', lab_id, dict_fixed_values_samples, list_fixed_values_samples, config)
for att_v in list_attributs_samples_values:
DBSession.add(att_v)
DBSession.flush()
#check widgets type
att_2_check = DBSession.query(Attributs).filter(and_(Attributs.lab_id == lab_id, Attributs.key == att_s, Attributs.owner == "sample")).first()
wid_sample_tmp = dict_widgets_sample_att[att_s]
for w_s in wid_sample_tmp:
if w_s != att_2_check.widget:
in_db_before = att_2_check.widget
in_db_now = w_s
att_2_check.widget = w_s
if in_db_before in fixed_value_case and in_db_now not in fixed_value_case:
att_2_check.fixed_value = False
elif in_db_before not in fixed_value_case and in_db_now in fixed_value_case:
att_2_check.fixed_value = True
DBSession.flush()
#check and update search buttons
if att_2_check is None:
print att_s, "not in db"
if att_2_check is not None and not att_2_check.searchable and att_2_check.key in list_searchable:
att_2_check.searchable = True
DBSession.flush()
elif att_2_check is not None and att_2_check.searchable and att_2_check.key not in list_searchable:
att_2_check.searchable = False
DBSession.flush()
for att_m in list_measurement_att:
att_m = unicode(att_m)
if att_m not in list_existant_keys:
#########################################
#### creating measurements attributs ####
#########################################
#TODO virer cast str
widget = str(dict_widgets_meas_att[att_m])
owner_widget = "measurement"
new_meas_attribut = self.build_attribut(att_m, lab_id, list_fixed_values_meas, list_searchable, list_deprecated, widget, owner_widget)
DBSession.add(new_meas_attribut)
DBSession.flush()
if new_meas_attribut.fixed_value == False:
#if Attribut do not get fixed values
att_value = self.build_None_attribut_value(new_meas_attribut.id)
DBSession.add(att_value)
DBSession.flush()
#########################################
####### creating attributs values #######
#########################################
###### for measurements #######
#########################################
dict_fixed_values_meas = {}
list_attributs_meas_values = self.build_attribut_value('meas_attributs:', lab_id, dict_fixed_values_meas, list_fixed_values_meas, config)
for att_v in list_attributs_meas_values:
DBSession.add(att_v)
DBSession.flush()
#check the widgets
att_2_check = DBSession.query(Attributs).filter(and_(Attributs.lab_id == lab_id, Attributs.key == att_m, Attributs.owner == "measurement")).first()
wid_meas_tmp = dict_widgets_meas_att[att_m]
for w_m in wid_meas_tmp:
if w_m != att_2_check.widget:
in_db_before = att_2_check.widget
in_db_now = w_m
att_2_check.widget = w_m
if in_db_before in fixed_value_case and in_db_now not in fixed_value_case:
att_2_check.fixed_value = False
elif in_db_before not in fixed_value_case and in_db_now in fixed_value_case:
att_2_check.fixed_value = True
DBSession.flush()
#check and update search buttons
if att_2_check is None:
print att_m, "not in db"
if att_2_check is not None and not att_2_check.searchable and att_2_check.key in list_searchable:
att_2_check.searchable = True
DBSession.flush()
elif att_2_check is not None and att_2_check.searchable and att_2_check.key not in list_searchable:
att_2_check.searchable = False
DBSession.flush()
#if lab choose to delete an attributs (or undelete a key...)
#Attributs obj have to stay into the db but user can not add others Attributs() with this key --> deprecated == True
not_deprecated_in_db = DBSession.query(Attributs).filter(and_(Attributs.lab_id == lab_id, Attributs.deprecated == False)).all()
for k in not_deprecated_in_db:
if k.key in list_deprecated:
k.deprecated = True
DBSession.add(k)
DBSession.flush()
deprecated_in_db = DBSession.query(Attributs).filter(and_(Attributs.lab_id == lab_id, Attributs.deprecated == True)).all()
for k in deprecated_in_db:
if k.key not in list_deprecated:
k.deprecated = False
DBSession.add(k)
DBSession.flush()
#test if deleted attributs_values
#build a dictionnary to fast check what is into db
dict_att_values_db = {}
for a in attributs:
#dict_att_values_db[a.key] = empty_list
list_tmp = []
for v in a.values:
if v.deprecated == False:
try:
list_tmp.append(str(v.value))
except:
list_tmp.append(v.value)
if len(list_tmp) == 0:
list_tmp = [None]
dict_att_values_db[str(a.key)] = list_tmp
#You have to check deletion BEFORE addition
#checking attribut value(s) deletion(s) in samples attributs
self.check_value_deletion(list_sample_att, dict_att_values_sample, dict_att_values_db, lab_id)
#checking attribut value(s) deletion(s) in measurements attributs
self.check_value_deletion(list_measurement_att, dict_att_values_meas, dict_att_values_db, lab_id)
#checking attribut value(s) addition in sample attributs
self.check_value_addition(list_sample_att, dict_att_values_sample, dict_att_values_db, lab_id)
#checking attribut value(s) addition in measurements attributs
self.check_value_addition(list_measurement_att, dict_att_values_meas, dict_att_values_db, lab_id)
# look if an user is admin or not
admins = tg.config.get('admin.mails')
group_admins = DBSession.query(Group).filter(Group.name == gl.group_admins).first()
if user.email in admins:
user not in group_admins.users and group_admins.users.append(user)
else:
user in group_admins.users and group_admins.users.remove(user)
DBSession.flush()
# create the authentication ticket
user = DBSession.query(User).filter(User.email == mail).first()
userdata = str(user.id)
ticket = auth_tkt.AuthTicket(
secret, user.email, remote_addr, tokens=token,
user_data=userdata, time=None, cookie_name=cookiename,
secure=True)
val = ticket.cookie_value()
# set it in the cookies
response.set_cookie(
cookiename,
value=val,
max_age=None,
path='/',
domain=None,
secure=False,
httponly=False,
comment=None,
expires=None,
overwrite=False)
#transaction.commit()
extern_meas = session.get("extern_meas", False)
check_tequila = session.get("check_tequila", False)
if extern_meas is False and check_tequila is False:
raise redirect(came_from)
elif extern_meas is False and check_tequila:
raise redirect("/search")
else:
del session["extern_meas"]
raise redirect(url('/measurements/external_add'))
def auth(self, came_from='/', **kw):
'''
Fetch user back from tequila.
Validate the key from tequila.
Log user.
'''
if not kw.has_key('key'):
raise redirect(came_from)
# take parameters
key = kw.get('key')
environ = request.environ
authentication_plugins = environ['repoze.who.plugins']
identifier = authentication_plugins['ticket']
secret = identifier.secret
cookiename = identifier.cookie_name
remote_addr = environ['REMOTE_ADDR']
# get user
principal = tequila.validate_key(key, 'tequila.epfl.ch')
if principal is None:
raise redirect('./login')
#in case of user gets several labs
try:
if session["first_passage"] == False:
#second passage
tmp_user = session["tmp_user"]
tmp_lab = session['tmp_lab']
except:
#first passage
session["first_passage"] = True
session["principal_tequila"] = principal
session.save()
tmp_user, tmp_lab = self.build_user(principal)
try:
mail = tmp_user.email
except:
flash(
"Sorry, you've been disconnected. You can try to relog yourself now",
'error')
raise redirect('/login/out')
# log or create him
user = DBSession.query(User).filter(
User.email == tmp_user.email).first()
if user is None:
user_group = DBSession.query(Group).filter(
Group.name == gl.group_users).first()
user_group.users.append(tmp_user)
DBSession.add(tmp_user)
DBSession.flush()
user = DBSession.query(User).filter(User.email == mail).first()
flash(u'Your account has been created %s' %
(user.firstname + ' ' + user.name, ))
DBSession.flush()
print "######################"
print "key user :"******"######################"
print "key user :"******"######################"
print "key user :"******"lab created : ", lab
else:
if lab not in user.labs:
lab.users.append(user)
DBSession.flush()
print "lab existing : ", lab
#create attributs / check existing attributs
attributs = DBSession.query(Attributs).filter(
Attributs.lab_id == lab.id).all()
if len(attributs) == 0:
attributs = None
lab_id = lab.id
#parsing "unit".ini
config = ConfigParser.RawConfigParser()
config.read(path_conf_unit(lab.name))
list_sample_att = (config.get('samples_attributs:main',
'keys')).split(',')
list_sample_hiding = (config.get('samples_hiding:main',
'keys')).split(',')
if len(list_sample_hiding) == 1 and list_sample_hiding[0] == '':
list_sample_hiding = ''
list_measurement_att = (config.get('meas_attributs:main',
'keys')).split(',')
list_meas_hiding = (config.get('meas_hiding:main', 'keys')).split(',')
if len(list_meas_hiding) == 1 and list_meas_hiding[0] == '':
list_meas_hiding = ''
list_searchable = (config.get('searchable_attributs:main',
'keys')).split(',')
list_deprecated = (config.get('deprecated_attributs:main',
'keys')).split(',')
dict_att_values_sample = {}
dict_att_values_meas = {}
dict_widgets_sample_att = {}
dict_widgets_meas_att = {}
dict_hiding_s_att = {}
dict_hiding_m_att = {}
for x in list_sample_att:
dict_att_values_sample[x] = (config.get('samples_attributs:' + x,
x)).split(',')
dict_widgets_sample_att[x] = (config.get('samples_attributs:' + x,
'widget')).split(',')
for x in list_measurement_att:
dict_att_values_meas[x] = (config.get('meas_attributs:' + x,
x)).split(',')
dict_widgets_meas_att[x] = (config.get('meas_attributs:' + x,
'widget')).split(',')
#to build the search page
search_fields_to_display = (config.get('search_grid_fields:main',
'keys')).split(',')
session["search_grid_fields"] = search_fields_to_display
#hidingradiobutton lists
#samples
if isinstance(list_sample_hiding, list):
for x in list_sample_hiding:
dic_mapping = {}
list_possibilities = (config.get('samples_attributs:' + x,
x)).split(',')
for p in list_possibilities:
attribs_by_poss = (config.get('samples_attributs:' + x,
p + "_mapping")).split(',')
dic_mapping[p] = attribs_by_poss
dict_hiding_s_att[x] = dic_mapping
if len(dict_hiding_s_att.keys()) > 0:
session["hiding_sample"] = dict_hiding_s_att
else:
session["hiding_sample"] = {}
#measurements
if isinstance(list_meas_hiding, list):
for x in list_meas_hiding:
dic_mapping = {}
list_possibilities = (config.get('meas_attributs:' + x,
x)).split(',')
for p in list_possibilities:
attribs_by_poss = (config.get('meas_attributs:' + x,
p + "_mapping")).split(',')
dic_mapping[p] = attribs_by_poss
dict_hiding_m_att[x] = dic_mapping
if len(dict_hiding_m_att.keys()) > 0:
session["hiding_meas"] = dict_hiding_m_att
else:
session["hiding_meas"] = {}
session.save()
#creating fixed values list
list_fixed_values_samples = []
list_fixed_values_meas = []
fixed_value_case = [
'singleselectfield', 'multiselectfield',
'hiding_singleselectfield', 'hiding_multiselectfield'
]
for fix_s in list_sample_att:
for i in dict_att_values_sample[fix_s]:
if i != "None":
if fix_s not in list_fixed_values_samples:
list_fixed_values_samples.append(fix_s)
for fix_m in list_measurement_att:
for i in dict_att_values_meas[fix_m]:
if i != "None":
if fix_m not in list_fixed_values_meas:
list_fixed_values_meas.append(fix_m)
print list_fixed_values_samples, "<--- fixed sample"
print list_fixed_values_meas, "<---- fixed meas"
if attributs is None:
#########################################
###### creating samples attributs #######
#########################################
for s in list_sample_att:
#TODO virer cast str
widget = str(dict_widgets_sample_att[s])
owner_widget = "sample"
attribut = self.build_attribut(s, lab_id,
list_fixed_values_samples,
list_searchable,
list_deprecated, widget,
owner_widget)
DBSession.add(attribut)
DBSession.flush()
if attribut.fixed_value == False:
#if Attribut do not get fixed values
att_value = self.build_None_attribut_value(attribut.id)
DBSession.add(att_value)
DBSession.flush()
#########################################
#### creating measurements attributs ####
#########################################
for m in list_measurement_att:
widget = str(dict_widgets_meas_att[m])
owner_widget = "measurement"
attribut = self.build_attribut(m, lab_id,
list_fixed_values_meas,
list_searchable,
list_deprecated, widget,
owner_widget)
DBSession.add(attribut)
DBSession.flush()
if attribut.fixed_value == False:
#if Attribut do not get fixed values
att_value = self.build_None_attribut_value(attribut.id)
DBSession.add(att_value)
DBSession.flush()
#########################################
####### creating attributs values #######
#########################################
####### for samples #######
#########################################
dict_fixed_values_samples = {}
list_attributs_samples_values = self.build_attribut_value(
'samples_attributs:', lab_id, dict_fixed_values_samples,
list_fixed_values_samples, config)
for att_v in list_attributs_samples_values:
DBSession.add(att_v)
DBSession.flush()
#########################################
###### for measurements #######
#########################################
dict_fixed_values_meas = {}
list_attributs_meas_values = self.build_attribut_value(
'meas_attributs:', lab_id, dict_fixed_values_meas,
list_fixed_values_meas, config)
for att_v in list_attributs_meas_values:
DBSession.add(att_v)
DBSession.flush()
#check if there is a new key (or several...) in the config file of the lab
else:
list_existant_keys = []
print list_searchable, "-------------searchable"
for k in attributs:
list_existant_keys.append(str(k.key))
for att_s in list_sample_att:
att_s = unicode(att_s)
if att_s not in list_existant_keys:
#########################################
###### creating samples attributs #######
#########################################
widget = str(dict_widgets_sample_att[att_s])
owner_widget = "sample"
new_sample_attribut = self.build_attribut(
att_s, lab_id, list_fixed_values_samples,
list_searchable, list_deprecated, widget, owner_widget)
print new_sample_attribut
DBSession.add(new_sample_attribut)
DBSession.flush()
if new_sample_attribut.fixed_value == False:
#if Attribut do not get fixed values
att_value = self.build_None_attribut_value(
new_sample_attribut.id)
DBSession.add(att_value)
DBSession.flush()
#########################################
####### creating attributs values #######
#########################################
####### for samples #######
#########################################
dict_fixed_values_samples = {}
list_attributs_samples_values = self.build_attribut_value(
'samples_attributs:', lab_id,
dict_fixed_values_samples, list_fixed_values_samples,
config)
for att_v in list_attributs_samples_values:
DBSession.add(att_v)
DBSession.flush()
#check widgets type
att_2_check = DBSession.query(Attributs).filter(
and_(Attributs.lab_id == lab_id, Attributs.key == att_s,
Attributs.owner == "sample")).first()
wid_sample_tmp = dict_widgets_sample_att[att_s]
for w_s in wid_sample_tmp:
if w_s != att_2_check.widget:
in_db_before = att_2_check.widget
in_db_now = w_s
att_2_check.widget = w_s
if in_db_before in fixed_value_case and in_db_now not in fixed_value_case:
att_2_check.fixed_value = False
elif in_db_before not in fixed_value_case and in_db_now in fixed_value_case:
att_2_check.fixed_value = True
DBSession.flush()
#check and update search buttons
if att_2_check is None:
print att_s, "not in db"
if att_2_check is not None and not att_2_check.searchable and att_2_check.key in list_searchable:
att_2_check.searchable = True
DBSession.flush()
elif att_2_check is not None and att_2_check.searchable and att_2_check.key not in list_searchable:
att_2_check.searchable = False
DBSession.flush()
for att_m in list_measurement_att:
att_m = unicode(att_m)
if att_m not in list_existant_keys:
#########################################
#### creating measurements attributs ####
#########################################
#TODO virer cast str
widget = str(dict_widgets_meas_att[att_m])
owner_widget = "measurement"
new_meas_attribut = self.build_attribut(
att_m, lab_id, list_fixed_values_meas, list_searchable,
list_deprecated, widget, owner_widget)
DBSession.add(new_meas_attribut)
DBSession.flush()
if new_meas_attribut.fixed_value == False:
#if Attribut do not get fixed values
att_value = self.build_None_attribut_value(
new_meas_attribut.id)
DBSession.add(att_value)
DBSession.flush()
#########################################
####### creating attributs values #######
#########################################
###### for measurements #######
#########################################
dict_fixed_values_meas = {}
list_attributs_meas_values = self.build_attribut_value(
'meas_attributs:', lab_id, dict_fixed_values_meas,
list_fixed_values_meas, config)
for att_v in list_attributs_meas_values:
DBSession.add(att_v)
DBSession.flush()
#check the widgets
att_2_check = DBSession.query(Attributs).filter(
and_(Attributs.lab_id == lab_id, Attributs.key == att_m,
Attributs.owner == "measurement")).first()
wid_meas_tmp = dict_widgets_meas_att[att_m]
for w_m in wid_meas_tmp:
if w_m != att_2_check.widget:
in_db_before = att_2_check.widget
in_db_now = w_m
att_2_check.widget = w_m
if in_db_before in fixed_value_case and in_db_now not in fixed_value_case:
att_2_check.fixed_value = False
elif in_db_before not in fixed_value_case and in_db_now in fixed_value_case:
att_2_check.fixed_value = True
DBSession.flush()
#check and update search buttons
if att_2_check is None:
print att_m, "not in db"
if att_2_check is not None and not att_2_check.searchable and att_2_check.key in list_searchable:
att_2_check.searchable = True
DBSession.flush()
elif att_2_check is not None and att_2_check.searchable and att_2_check.key not in list_searchable:
att_2_check.searchable = False
DBSession.flush()
#if lab choose to delete an attributs (or undelete a key...)
#Attributs obj have to stay into the db but user can not add others Attributs() with this key --> deprecated == True
not_deprecated_in_db = DBSession.query(Attributs).filter(
and_(Attributs.lab_id == lab_id,
Attributs.deprecated == False)).all()
for k in not_deprecated_in_db:
if k.key in list_deprecated:
k.deprecated = True
DBSession.add(k)
DBSession.flush()
deprecated_in_db = DBSession.query(Attributs).filter(
and_(Attributs.lab_id == lab_id,
Attributs.deprecated == True)).all()
for k in deprecated_in_db:
if k.key not in list_deprecated:
k.deprecated = False
DBSession.add(k)
DBSession.flush()
#test if deleted attributs_values
#build a dictionnary to fast check what is into db
dict_att_values_db = {}
for a in attributs:
#dict_att_values_db[a.key] = empty_list
list_tmp = []
for v in a.values:
if v.deprecated == False:
try:
list_tmp.append(str(v.value))
except:
list_tmp.append(v.value)
if len(list_tmp) == 0:
list_tmp = [None]
dict_att_values_db[str(a.key)] = list_tmp
#You have to check deletion BEFORE addition
#checking attribut value(s) deletion(s) in samples attributs
self.check_value_deletion(list_sample_att, dict_att_values_sample,
dict_att_values_db, lab_id)
#checking attribut value(s) deletion(s) in measurements attributs
self.check_value_deletion(list_measurement_att,
dict_att_values_meas, dict_att_values_db,
lab_id)
#checking attribut value(s) addition in sample attributs
self.check_value_addition(list_sample_att, dict_att_values_sample,
dict_att_values_db, lab_id)
#checking attribut value(s) addition in measurements attributs
self.check_value_addition(list_measurement_att,
dict_att_values_meas, dict_att_values_db,
lab_id)
# look if an user is admin or not
admins = tg.config.get('admin.mails')
group_admins = DBSession.query(Group).filter(
Group.name == gl.group_admins).first()
if user.email in admins:
user not in group_admins.users and group_admins.users.append(user)
else:
user in group_admins.users and group_admins.users.remove(user)
DBSession.flush()
# create the authentication ticket
user = DBSession.query(User).filter(User.email == mail).first()
userdata = str(user.id)
ticket = auth_tkt.AuthTicket(secret,
user.email,
remote_addr,
tokens=token,
user_data=userdata,
time=None,
cookie_name=cookiename,
secure=True)
val = ticket.cookie_value()
# set it in the cookies
response.set_cookie(cookiename,
value=val,
max_age=None,
path='/',
domain=None,
secure=False,
httponly=False,
comment=None,
expires=None,
overwrite=False)
#transaction.commit()
extern_meas = session.get("extern_meas", False)
check_tequila = session.get("check_tequila", False)
if extern_meas is False and check_tequila is False:
raise redirect(came_from)
elif extern_meas is False and check_tequila:
raise redirect("/search")
else:
del session["extern_meas"]
raise redirect(url('/measurements/external_add'))
