def _get_sorted_processing_worklists(self):
"""
If the job is processed first me must fetch potential buffer worklists
from the ISO request worklists as well.
"""
return LAB_ISO_ORDERS.get_sorted_worklists_for_job(self.entity,
self._processing_order)
def _get_sorted_processing_worklists(self):
"""
If the job is processed first me must fetch potential buffer worklists
from the ISO request worklists as well.
"""
return LAB_ISO_ORDERS.get_sorted_worklists_for_job(
self.entity, self._processing_order)
def _get_sorted_processing_worklists(self):
"""
If the job is processed first me must remove potential buffer worklists
from the ISO request worklists because these have already been handled
before by the job.
"""
return LAB_ISO_ORDERS.get_sorted_worklists_for_iso(
self.entity, self._processing_order)
def _get_sorted_processing_worklists(self):
"""
If the job is processed first me must remove potential buffer worklists
from the ISO request worklists because these have already been handled
before by the job.
"""
return LAB_ISO_ORDERS.get_sorted_worklists_for_iso(self.entity,
self._processing_order)
def _get_sample_type_str(self):
if self.executor.ENTITY_CLS == IsoJob:
return self.SAMPLE_TYPE_CONTROLS
processing_order = LAB_ISO_ORDERS.get_order(self.executor.entity)
if processing_order == LAB_ISO_ORDERS.NO_ISO:
return self.SAMPLE_TYPE_CONTROLS
pool_set = self.executor.entity.molecule_design_pool_set
if pool_set is None:
return self.SAMPLE_TYPE_CONTROLS
if processing_order == LAB_ISO_ORDERS.NO_JOB:
# but we do have a pool set
return self.SAMPLE_TYPE_BOTH
else:
return self.SAMPLE_TYPE_SAMPLES
def _get_sample_type_str(self):
if self.executor.ENTITY_CLS == IsoJob:
return self.SAMPLE_TYPE_CONTROLS
processing_order = LAB_ISO_ORDERS.get_order(self.executor.entity)
if processing_order == LAB_ISO_ORDERS.NO_ISO:
return self.SAMPLE_TYPE_CONTROLS
pool_set = self.executor.entity.molecule_design_pool_set
if pool_set is None:
return self.SAMPLE_TYPE_CONTROLS
if processing_order == LAB_ISO_ORDERS.NO_JOB:
# but we do have a pool set
return self.SAMPLE_TYPE_BOTH
else:
return self.SAMPLE_TYPE_SAMPLES
def __get_processing_order(self):
# Returns the order of ISO processing for the associated entity.
self._processing_order = LAB_ISO_ORDERS.get_order(self.entity)
alt_entity_cls = None
if (self._ENTITY_CLS == LabIso and \
self._processing_order == LAB_ISO_ORDERS.NO_ISO):
alt_entity_cls = IsoJob
elif (self._ENTITY_CLS == IsoJob and \
self._processing_order == LAB_ISO_ORDERS.NO_JOB):
alt_entity_cls = LabIso
if alt_entity_cls is not None:
msg = 'The %s does not need to be processed. Please proceed with ' \
'the %s processing.' \
% (get_entity_cls_displayname(self._ENTITY_CLS),
get_entity_cls_displayname(alt_entity_cls))
self.add_error(msg)
def __get_processing_order(self):
# Returns the order of ISO processing for the associated entity.
self._processing_order = LAB_ISO_ORDERS.get_order(self.entity)
alt_entity_cls = None
if (self._ENTITY_CLS == LabIso and \
self._processing_order == LAB_ISO_ORDERS.NO_ISO):
alt_entity_cls = IsoJob
elif (self._ENTITY_CLS == IsoJob and \
self._processing_order == LAB_ISO_ORDERS.NO_JOB):
alt_entity_cls = LabIso
if alt_entity_cls is not None:
msg = 'The %s does not need to be processed. Please proceed with ' \
'the %s processing.' \
% (get_entity_cls_displayname(self._ENTITY_CLS),
get_entity_cls_displayname(alt_entity_cls))
self.add_error(msg)
def __check_iso_status(self):
"""
Checks the status of the involved ISOs.
The rack status are checked later.
"""
self.add_debug('Check ISO status ...')
self._processing_order = LAB_ISO_ORDERS.get_order(self.entity)
self._get_expected_iso_status()
if not self._expected_iso_status is None:
invalid_status = []
for iso in self.__final_layouts.keys():
if not iso.status == self._expected_iso_status:
info = '%s (expected: %s, found: %s)' % (
iso.label, self._expected_iso_status.replace(
'_', ' '), iso.status.replace('_', ' '))
invalid_status.append(info)
if len(invalid_status) > 0:
msg = 'Unexpected ISO status: %s!' \
% (', '.join(sorted(invalid_status)))
self.add_error(msg)
def __check_iso_status(self):
"""
Checks the status of the involved ISOs.
The rack status are checked later.
"""
self.add_debug('Check ISO status ...')
self._processing_order = LAB_ISO_ORDERS.get_order(self.entity)
self._get_expected_iso_status()
if not self._expected_iso_status is None:
invalid_status = []
for iso in self.__final_layouts.keys():
if not iso.status == self._expected_iso_status:
info = '%s (expected: %s, found: %s)' % (iso.label,
self._expected_iso_status.replace('_', ' '),
iso.status.replace('_', ' '))
invalid_status.append(info)
if len(invalid_status) > 0:
msg = 'Unexpected ISO status: %s!' \
% (', '.join(sorted(invalid_status)))
self.add_error(msg)
