def genDiploid(numberofalleles=0): """ """ alleles = numberofalleles diploid = (xayastats.diceroll(1,alleles), xayastats.diceroll(1,alleles)) return diploid # return dipoid as a two item tuple
def createRandomDirectedNetwork(nodes=0, edges=0):
'''Given a number of nodes and edges, generate a random directed graph
in XAYA format, where each edge is randomly generated. Arcs from a node,
back into that node are disallowed in the current version.
Last modified, Sept, 29, 2009.
'''
#Create an empty network data structure
network = {}
#If either nodes or edges are 0/negative, return an empty graph
if (nodes <=0) or (edges <= 0):
return network
# Check that edges < nodes * (nodes-1) -- i.e. a complete graph minus self-arcs
if edges > nodes * (nodes - 1):
return network
#Use while loop to determine when sufficient edges produced
while countNetworkEdges(network) < edges:
#Generate a node value
nodevalue = xayastats.diceroll(1,nodes)
#Generate an Edge value
edgevalue = xayastats.diceroll(1,nodes)
#Check for self-loops. If self loop return to top of While
if nodevalue != edgevalue:
#If node does not already exist, add it and value
if not network.has_key(nodevalue):
network[nodevalue] = [edgevalue]
else:
#Check if value already in an arc, and if not, add it.
if edgevalue not in network[nodevalue]:
network[nodevalue].append(edgevalue)
#reversednetwork = xayacore.reverseGraph(network)-- not working as expected
#undirectednetwork = xayacore.unionGraphs(network, reversednetwork) --nwaexpcted
return network
def genHaploid(numberofalleles= 0): """ Given a number of sex alleles, randomly generate a haploid genotype. """ #Set internal variable from parameters alleles = numberofalleles # Randomly generate haploid haploid = xayastats.diceroll(1, alleles) return (haploid) # return haploid as a 1 item tuple
def NOTWORKINGcreateRandomUndirectedNetwork(nodes=0, edges=0):
'''Given a number of nodes and edges, generate a random undirected graph
(as pairs of edges in a directed graph) where each edge is randomly generated,
sampling is without replacement -- so no edge is generated twice.
'''
#Create an empty network data structure
network = {}
#Set EdgeCounter to 0
edgecounter = 0
# Start Node and Edge Generation loop
while edgecounter < edges:
#Generate a node value
nodevalue = xayastats.diceroll(1,nodes)
#Generate an Edge value
edgevalue = xayastats.diceroll(1,nodes)
# Check if network has node and edge values already -- bidirectional
# Check forward order
alreadyin = 0
if network.has_key(nodevalue):
if edgevalue in network[nodevalue]:
alreadyin = 1
# Check Reverse Order
if network.has_key(edgevalue):
if nodevalue in network[edgevalue]:
alreadyin = 1
# If arc does not exist already
if alreadyin != 1:
#If node does not already exist, add it and value and iterate counter
if not network.has_key(nodevalue):
network[nodevalue] = [edgevalue]
edgecounter = edgecounter + 1
# Otherwise add the value and iterate counter
else: network[nodevalue].append(edgevalue)
edgecounter = edgecounter + 1
else: return network