The goal of specmine is to provide a set of methods for metabolomics data analysis, including data loading in different formats, pre-processing, metabolite identification, univariate and multivariate data analysis, machine learning, feature selection and pathway analysis. Case studies can be found on the website: http://bio.di.uminho.pt/metabolomicspackage/index.html. This package suggests ‘rcytoscapejs’, a package not in mainstream repositories. If you need to install it, use: devtools::install_github('cytoscape/r-cytoscape.js@v0.0.7').

You can install the released version of specmine from CRAN with:

install.packages("specmine")

And the development version from GitHub with:

# install.packages("devtools")
devtools::install_github("BioSystemsUM/specmine")

This is a basic example which shows you how to load the namespace of specmine and add it to your search list:

library(specmine)