A set of utilities to run ET-SPEC/Etphantom (NOT INCLUDED IN THIS REPOSITORY) from the command line

THIS CODES DEPENDS ON ET-SPEC application which is NOT part of this repository see this note

NOTE: This package does NOT include ET-SPEC. For a copy of ET-SPEC send an email to etspec@ncmir.ucsd.edu

• Free software: Not open source See LICENSE.txt for more information

• rotate_3dmarkers.py rotates 3Dmarkers.txt file generated by ET-SPEC
• shift_fidfilemarkers.py shifts markers in IMOD fiducial file generated by ET-SPEC
• create_tiltseries.py creates simulated electron tomography tilt series using from SBEM MRC using ET-SPEC

• Argparse
• Working installation of ET-SPEC For a copy of ET-SPEC send email to etspec@ncmir.ucsd.edu
• IMOD

• Should work on Python 2.6, 2.7 on Linux distributions (tested with Centos)

git clone https://github.com/crbs/etspecutil
cd etspecutil
make dist
pip install dist/etspecutil*whl

See https://github.com/crbs/etspecutil/wiki

See LICENSE.txt

• This work was supported by <enter info here>

• Tsvi Katchalski did initial protoype development of these scripts and designed the steps to take for creation of multi-tilt simulated electron tomography dataset

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.