Scripts to process the PDB protein-kinase dataset. Requires hmmer to be installed, and IvoGPU with the utils folder on the PATH.
Rough outline of steps to do the analysis:
cd structure
mkdir my_dataset
cd my_dataset
mv ~/my_pdb_file_collection PDB
../process.sh
cd ../../contacts
mkdir my_dataset
cd my_dataset
../processPDBs.sh ./../structure/my_dataset
../analyzePDBs.sh