Pertussis Transmission Model

My Master's Thesis

There are 3 files in the main folder:

_1_run.py runs the mcmc proccess
_2_Analysis is a notebook for analayzing results and creating charts for the paper
_3_Simulation is for policy simulation on final, tested, good runs.

Name		Name	Last commit message	Last commit date
Latest commit History 39 Commits
data		data
pertussis		pertussis
.gitignore		.gitignore
Age Groups.ipynb		Age Groups.ipynb
README.md		README.md
_2_Analysis.ipynb		_2_Analysis.ipynb
_3_Simulation.ipynb		_3_Simulation.ipynb
_4_Simulation_Analysis.ipynb		_4_Simulation_Analysis.ipynb
_run.py		_run.py
_runV2.py		_runV2.py
_run_random.py		_run_random.py
_simulate.py		_simulate.py
backup_MCMC_1101_LOOP.ipynb		backup_MCMC_1101_LOOP.ipynb
backup_hetro_self_mcmc_0208_Monthly_Data_Only-Copy1.ipynb		backup_hetro_self_mcmc_0208_Monthly_Data_Only-Copy1.ipynb
backup_hetro_self_mcmc_0208_Monthly_Data_Only.ipynb		backup_hetro_self_mcmc_0208_Monthly_Data_Only.ipynb
backup_hetro_self_mcmc_0403_Single_Chain.ipynb		backup_hetro_self_mcmc_0403_Single_Chain.ipynb
dean_style.conf		dean_style.conf
model_w_figures.py		model_w_figures.py
models.ipynb		models.ipynb
notes.md		notes.md
policy.png		policy.png
run_difference_model.py		run_difference_model.py
run_hetro_mcmc.py		run_hetro_mcmc.py

DeanLa/pertussis_model