BioDepot is a self-contained tool with graphical user interface for bioinformatic workflows. The package is based on Orange 3 by Biolab and NoVnc. Widgets are mainly written in Python (Qt5, Docker-Py, PyQt5).

• Docker 1.13.0
• Internet Browser

Currently, BwB uses docker sock binding, to run BwB:

1. Install Docker
2. On Docker-enabled machines run:

docker run --rm -p 6080:6080 -v ~/Desktop:/data -v /var/run/docker.sock:/var/run/docker.sock biodepot/bwb

3. BwB can be accessed from browser: http://localhost:6080 (for windows machines, you'll need to know the address of your docker-machine)

To add a widget to BioDepot:

1. Download BioDepot source codes:
 https://github.com/BioDepot/BioDepot-workflow-builder/tree/master/biodepot 

2. Locate to folder orangebiodepot (eg: ~/Desktop/biodepot/orangebiodepot)

3. Write the widget (or copy any of existing widgets and modify as necessary)

4. On BwB, run xterm and locate to the shared widget location (e.g: /data/biodepot)

5. Rebuild BioDepot and rerun Orange:

    pip3 uninstall BioDepot
    pip3 install -e .
    orange-canvas

• Demo: Link
• Manual: Manual