NB_Distribution

Linking CO and KOs in RI

The main notebook is Linking CO and KOs combined.ipynb.

Linking CO and KOs.withFigures.ipynb has some figures I want to keep, but might not be used in the future

TrackOxoglutarate.ipynb was used to quantify the most abundant compounds and consider how many different pathways/reactions they are in

Name		Name	Last commit message	Last commit date
Latest commit History 71 Commits
.ipynb_checkpoints		.ipynb_checkpoints
oldVersionsAndParts		oldVersionsAndParts
plots_inverse_Km0		plots_inverse_Km0
plots_inverse_Km2		plots_inverse_Km2
plots_inverse_Km3		plots_inverse_Km3
plots_inverse_Km4		plots_inverse_Km4
plots_inverse_Km5		plots_inverse_Km5
plots_regular_Km0		plots_regular_Km0
plots_regular_Km1		plots_regular_Km1
plots_regular_Km2		plots_regular_Km2
plots_regular_Km3		plots_regular_Km3
plots_regular_Km4		plots_regular_Km4
plots_regular_Km5		plots_regular_Km5
.gitignore		.gitignore
CreateHash_COtoKO.py		CreateHash_COtoKO.py
CreateHash_COtoKO.pyc		CreateHash_COtoKO.pyc
Data_exploration_plotting.ipynb		Data_exploration_plotting.ipynb
Determine_Optimal_Number_Kmeans_Groups.ipynb		Determine_Optimal_Number_Kmeans_Groups.ipynb
GrpSpecies		GrpSpecies
K08693_gene_forLiz.pdf		K08693_gene_forLiz.pdf
Kmeans_inverse.png		Kmeans_inverse.png
Kmeans_regular.png		Kmeans_regular.png
Linking CO and KOs.combined.ipynb		Linking CO and KOs.combined.ipynb
Linking CO and KOs.withFigures.ipynb		Linking CO and KOs.withFigures.ipynb
NB_combined_for_kmeans.csv		NB_combined_for_kmeans.csv
README.md		README.md
RImetabolites_isomers.2016.09.01.csv		RImetabolites_isomers.2016.09.01.csv
TrackOxoglutarate.ipynb		TrackOxoglutarate.ipynb
br08901.keg		br08901.keg
exportCOnumbers.csv		exportCOnumbers.csv
exportCOnumbers.csv.pickle		exportCOnumbers.csv.pickle
fxn_gatherDetails.py		fxn_gatherDetails.py
fxn_gatherDetails.pyc		fxn_gatherDetails.pyc
fxn_gatherDetails_working.py		fxn_gatherDetails_working.py
fxn_gatherDetails_working.pyc		fxn_gatherDetails_working.pyc
gatherCounts_norm2mean_inverse.2016.09.01.pickle		gatherCounts_norm2mean_inverse.2016.09.01.pickle
gatherCounts_norm2mean_regular.2016.09.01.pickle		gatherCounts_norm2mean_regular.2016.09.01.pickle
nClustersRequired.py		nClustersRequired.py
readme_colorsInPathways.txt		readme_colorsInPathways.txt
running_Script.pickle		running_Script.pickle
topTen.png		topTen.png

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