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cellprofiler

cellprofiler

 
 

plugins

plugins

 
 

subimager

subimager

 
 

.gitignore

.gitignore

 
 

README

README

 
 

challenge_and_cleanup.cp

challenge_and_cleanup.cp

 
 

combinetiff.py

combinetiff.py

 
 

eigentexture.py

eigentexture.py

 
 

extract_features.py

extract_features.py

 
 

make_classifier.py

make_classifier.py

 
 

ordinalimage.py

ordinalimage.py

 
 

score.py

score.py

 
 

tiffcvt.py

tiffcvt.py

 
 

train.py

train.py

 
 

training_set.py

training_set.py

 
 

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This is the code for creating the segmentation and for cleaning up the
segmentation in a CellProfiler module.

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Code for my entry in the ISBI 2012 challenge.

fiji.sc/wiki/index.php/Segmentation_of_neuronal_structures_in_EM_stacks_challenge_-_ISBI_2012#

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