LIver Surgery Analyser.

See our install notes for Linux, Mac OS and Windows

Install stable branche

wget https://raw.githubusercontent.com/mjirik/lisa/master/installer.sh
source installer.sh devel

or for current developement

wget https://raw.githubusercontent.com/mjirik/lisa/master/installer.sh
source installer.sh devel

or use Lisa in Ubuntu for VirtualBox

python mysetup.py -d

Object (usualy liver) extraction is started by organ_segmentation script

./lisa.sh

or

python lisa.py

Segmentation use two types of seeds wich are setted by left and right mouse button. For better volume measurement control use additional parameters for example "-mroi" and "-vs 0.8". If "-mroi" parameter is used you can select region of interest.

Vessel localization uses saved data (organ.pkl) from organ_segmentation:

python src/vessels_segmentation.py -bg -i organ.pkl

Now user interactivity is used to set threshold parametr.

Virtual liver resection is based on data stored in previous step (vessels.pkl).

python src/vessel_cut.py -oe -i vessels.pkl

In this script is selected cut on vessel by user interactivity. Resected and remaining volume is then calculated.

Generated documentation can be found here

nosetests