compbio-utils

Miscellaneous, very simple bioinfo scripts.

Use at your own risk. Contains broken, old and orphaned stuff.

Name		Name	Last commit message	Last commit date
Latest commit History 149 Commits
.gitignore		.gitignore
README.md		README.md
add_fake_rg.sh		add_fake_rg.sh
alnscore.py		alnscore.py
bam_est_err.py		bam_est_err.py
bam_readlen.sh		bam_readlen.sh
bam_sq2bed.sh		bam_sq2bed.sh
bam_to_genomefile.sh		bam_to_genomefile.sh
bam_unclip.py		bam_unclip.py
bedlen.sh		bedlen.sh
binning.sh		binning.sh
bioutils.py		bioutils.py
conv_blasr_samqv.py		conv_blasr_samqv.py
counts.py		counts.py
decode_ascii_phred.py		decode_ascii_phred.py
describe.py		describe.py
fa2vie.sh		fa2vie.sh
fasta_to_fastq.py		fasta_to_fastq.py
fastq_barcode.sh		fastq_barcode.sh
fastq_enc_from_fastqc.sh		fastq_enc_from_fastqc.sh
fastq_num_reads.py		fastq_num_reads.py
find_missing.sh		find_missing.sh
flatten_mutatrix_vcf.py		flatten_mutatrix_vcf.py
gapped_contig_joiner.py		gapped_contig_joiner.py
gb_annotation_transfer.py		gb_annotation_transfer.py
genome_split.py		genome_split.py
h5tosam.py		h5tosam.py
hrun_from_fa.py		hrun_from_fa.py
join_small_regions.py		join_small_regions.py
mempeak.sh		mempeak.sh
mutect_cat.py		mutect_cat.py
nuc_info.py		nuc_info.py
paired_nuc_freqs_from_bam.py		paired_nuc_freqs_from_bam.py
pairs_from_nsorted_bam.py		pairs_from_nsorted_bam.py
pb_indelquals_to_bam.py		pb_indelquals_to_bam.py
plot_recal.py		plot_recal.py
prune_aln_cols.py		prune_aln_cols.py
repeats_to_bed.py		repeats_to_bed.py
revcomp.py		revcomp.py
rnaplfold.py		rnaplfold.py
rnaplfold_to_wig.py		rnaplfold_to_wig.py
run_prefab.py		run_prefab.py
run_prefab.py.README		run_prefab.py.README
seqstat.py		seqstat.py
snver_vcf_pv_to_qual.py		snver_vcf_pv_to_qual.py
split_nsorted_bam.py		split_nsorted_bam.py
splitbam.py		splitbam.py
sq_from_bam.sh		sq_from_bam.sh
strelka_indel_af.py		strelka_indel_af.py
uniqc.sh		uniqc.sh
uniquify_fasta_ids.sh		uniquify_fasta_ids.sh
varscan_vcf_pv_to_qual.py		varscan_vcf_pv_to_qual.py
vcf_get_val.py		vcf_get_val.py
vcf_matches_ref.py		vcf_matches_ref.py
vcf_read_support.py		vcf_read_support.py
vcf_shared_multi.py		vcf_shared_multi.py
vcf_var_rel_pos.py		vcf_var_rel_pos.py
vcf_venn.py		vcf_venn.py

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