import sys sys.path.append(pathToCalBlitz) sys.path.append(pathToZebrafishTools) from ZebrafishTools import ZebrafishTools

zft = ZebrafishTools([MovieFile1,MovieFile2,...],nchan=2)

zft.motionCorrect(index=movieIndex)

zft.motionCorrect(filename=movieFile)

zft.findNeuronsFromStDev()

zft.computeNeuronVars()

zft.plotROIsOverlay()

import pylab as plt plt.plot(zft.neuronDFFs[neuronIndex])