/
nora.py
1112 lines (882 loc) · 36.5 KB
/
nora.py
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#!/usr/bin/env python
"""
An example of how to use wx or wxagg in an application with the new
toolbar - comment out the setA_toolbar line for no toolbar
"""
# Used to guarantee to use at least Wx2.8
import wxversion
wxversion.ensureMinimal('2.8')
import numpy as np
import matplotlib
from mpl_toolkits.mplot3d import Axes3D
# uncomment the following to use wx rather than wxagg
#matplotlib.use('WX')
#from matplotlib.backends.backend_wx import FigureCanvasWx as FigureCanvas
# comment out the following to use wx rather than wxagg
matplotlib.use('WXAgg')
from matplotlib.backends.backend_wxagg import FigureCanvasWxAgg as FigureCanvas
from matplotlib.backends.backend_wx import NavigationToolbar2Wx
from matplotlib.figure import Figure
import wx, wx.html, sys,getopt
useCalcValues = True
MARKERSIZE = 10
def getRandomColor():
from random import random
red = random()
blue = random()
green = random()
return "#%02x%02x%02x" % (red*255, green*255, blue*255)
def plot2d(values, title):
import matplotlib.pyplot as plt
plotLegend = False
f = plt.figure(1)
f.suptitle(title)
plt.cla()
plt.xlabel("modelNumber")
#plt.title(title)
#TODO this is a crap
isMultArr = hasattr(values[0][0], "__len__")
if(isMultArr):
for i in range(len(values)):
if(len(values[i])==3):
plt.plot(values[i][0], values[i][1], label=values[i][2])
plotLegend = True
else:
plt.plot(values[i][0], values[i][1])
else:
plt.plot(values[0], values[1])
plt.draw()
plt.show(block=False)
if plotLegend:
#plt.legend(loc='upper center', bbox_to_anchor=(1, 0.5))
#plt.legend(bbox_to_anchor=(0., 1.02, 1., .102), loc=3,ncol=2, mode="expand", borderaxespad=0.).draggable()
plt.legend(bbox_to_anchor=(0., 1.02, 1., .102), loc=3).draggable()
class PickDialog(wx.Panel):
class RangeCheckbox(wx.Panel):
def __init__(self, parent, rangeValue, parentFrame):
wx.Panel.__init__(self, parent, -1)
sizer = wx.BoxSizer(wx.HORIZONTAL)
check = wx.CheckBox(self, -1, str(rangeValue))
check.Bind(wx.EVT_CHECKBOX, self.OnCheck)
self.cb = wx.ComboBox(self,size=(100,20), choices=["1","2"])
self.cb.SetValue("1")
#self.cb.Append("Undefined", 0)
#self.cb.Append("Object 1", 1)
#self.cb.Append("Object 2", 2)
self.cb.Bind(wx.EVT_COMBOBOX, self.onSelect)
sizer.Add(check)
sizer.Add(self.cb)
self.SetSizer(sizer)
self.rangeValue = rangeValue
self.parentFrame = parentFrame
check.SetValue(parentFrame.ranges[rangeValue][0])
def OnCheck(self,event):
self.parentFrame.ranges[self.rangeValue][0] = not self.parentFrame.ranges[self.rangeValue][0]
self.parentFrame.plotMyData()
self.parentFrame.repaint()
def onSelect(self, event):
self.parentFrame.ranges[self.rangeValue][1] = int(self.cb.GetValue())
self.parentFrame.plotMyData()
self.parentFrame.repaint()
def __init__(self,parentPanel, parentFrame):
wx.Panel.__init__(self, parentPanel)
self.SetSize((600,600))
sizer = wx.BoxSizer(wx.VERTICAL)
sizer.Add(wx.StaticText(self, -1, "Groups of particles"))
for item in sorted(parentFrame.ranges.items()):
sizer.Add(PickDialog.RangeCheckbox(self, item[0], parentFrame ))
panelButtons = wx.Panel(self)
sizer2 = wx.BoxSizer(wx.HORIZONTAL)
button1 = wx.Button(panelButtons, label="<<", size=(30, 30))
button1.Bind(wx.EVT_BUTTON, parentFrame.readFirstModel)
sizer2.Add(button1)
button2 = wx.Button(panelButtons, label="<", size=(30, 30) )
button2.Bind(wx.EVT_BUTTON, parentFrame.readPrevModel)
sizer2.Add(button2)
button3 = wx.Button(panelButtons, label=">" , size=(30, 30) )
button3.Bind(wx.EVT_BUTTON, parentFrame.readNextModel)
sizer2.Add(button3)
button4 = wx.Button(panelButtons, label=">>" ,size=(30, 30))
button4.Bind(wx.EVT_BUTTON, parentFrame.readLastModel)
sizer2.Add(button4)
panelButtons.SetSizer(sizer2)
sizer.Add(panelButtons)
#sliders for mult am and vel
sizer.Add(wx.StaticText(self, -1, "Mult vel and am:"))
slider1 = wx.Slider(self, -1, 10, 0, 100, size=(150,50),style = wx.SL_HORIZONTAL | wx.SL_AUTOTICKS | wx.SL_LABELS)
slider1.Bind(wx.EVT_SLIDER, parentFrame.sliderUpdateVel)
slider2 = wx.Slider(self, -1, 100, 0, 1000, size=(150,50), style = wx.SL_HORIZONTAL | wx.SL_AUTOTICKS | wx.SL_LABELS)
slider2.Bind(wx.EVT_SLIDER, parentFrame.sliderUpdateAM)
sizer.Add(slider1)
sizer.Add(slider2)
self.SetSizer(sizer)
print(" ---- end " + str(self.GetSize()))
#repaint
parentPanel.Layout()
parentPanel.Fit()
sizer.Layout()
self.Fit()
self.Show(True)
def OnClear(self,event):
for child in self.GetChildren():
if(type(child) is wx.Panel):
child.Destroy()
from matplotlib.patches import FancyArrowPatch
from mpl_toolkits.mplot3d import proj3d
class Arrow3D(FancyArrowPatch):
def __init__(self, xs, ys, zs, *args, **kwargs):
FancyArrowPatch.__init__(self, (0,0), (0,0), *args, **kwargs)
self._verts3d = xs, ys, zs
def draw(self, renderer):
xs3d, ys3d, zs3d = self._verts3d
xs, ys, zs = proj3d.proj_transform(xs3d, ys3d, zs3d, renderer.M)
self.set_positions((xs[0],ys[0]),(xs[1],ys[1]))
FancyArrowPatch.draw(self, renderer)
class CanvasFrame(wx.Frame):
def reloadModel(self):
filename = self.globPattern.replace("*", str(self.modelNumbers[self.currentModelNumberIndex]) )
print("FILENAME %s" % filename)
self.data = np.loadtxt(filename)
self.plotMyData()
self.repaint()
def __init__(self, globPattern):
self.multAM = 100
self.multVel = 10
self.globPattern = globPattern
#read model
self.modelNumbers = []
import glob,re
for name in glob.glob(globPattern):
m = re.search("(\d+)", name)
if(m):
#print(m.group(1))
self.modelNumbers.append(int(m.group(1)))
self.modelNumbers=sorted(self.modelNumbers)
self.currentModelNumberIndex = 0
filename = globPattern.replace("*", str(self.modelNumbers[self.currentModelNumberIndex]))
print("FILENAME %s" % filename)
import re
from nora_config import ranges
self.ranges = ranges
self.objColor = {}
for k in self.ranges.keys():
v = self.ranges[k]
if not self.objColor.has_key(v[1]):
self.objColor[v[1]] = getRandomColor()
self.numpart = max(self.ranges.keys(), key=int)
print(self.numpart)
print(self.ranges)
self.data = np.loadtxt(filename)
self.vector = None
wx.Frame.__init__(self,None,-1,
'CanvasFrame')
self.SetBackgroundColour(wx.NamedColour("WHITE"))
self.Bind(wx.EVT_CLOSE, self.OnClose)
menuBar = wx.MenuBar()
menu = wx.Menu()
m_showObjects = menu.Append(-1, "Center distance", "Center distance")
self.Bind(wx.EVT_MENU, self.OnCenterDistance, m_showObjects)
m_showObjects = menu.Append(-1, "Center of mass distance", "Center of mass distance")
self.Bind(wx.EVT_MENU, self.OnCenterMassDistance, m_showObjects)
m_showObjects = menu.Append(-1, "Angular moment 1", "Angular moment 1")
self.Bind(wx.EVT_MENU, self.OnAngMom1, m_showObjects)
m_showObjects = menu.Append(-1, "Angular moment 2", "Angular moment 2")
self.Bind(wx.EVT_MENU, self.OnAngMom2, m_showObjects)
m_showObjects = menu.Append(-1, "Total Angular moment", "Total Angular moment ")
self.Bind(wx.EVT_MENU, self.OnAngMomTotal, m_showObjects)
m_exit = menu.Append(wx.ID_EXIT, "E&xit\tAlt-X", "Close window and exit program.")
self.Bind(wx.EVT_MENU, self.OnClose, m_exit)
menuBar.Append(menu, "&Each")
menu = wx.Menu()
m_showObjects = menu.Append(-1, "Angular moment 1", "Angular moment 1")
self.Bind(wx.EVT_MENU, self.OnAngMomCalc1, m_showObjects)
m_showObjects = menu.Append(-1, "Angular moment 2", "Angular moment 2")
self.Bind(wx.EVT_MENU, self.OnAngMomCalc2, m_showObjects)
m_showObjects = menu.Append(-1, "Angular moment both", "Angular moment both")
self.Bind(wx.EVT_MENU, self.OnAngMomCalcTotal, m_showObjects)
m_showObjects = menu.Append(-1, "Center distance", "Center distance")
self.Bind(wx.EVT_MENU, self.OnCenterDistanceCalc, m_showObjects)
m_showObjects = menu.Append(-1, "Center of mass distance", "Center of mass distance")
self.Bind(wx.EVT_MENU, self.OnCenterOfMassDistanceCalc, m_showObjects)
m_showObjects = menu.Append(-1, "Center distance compare", "Center distance compare")
self.Bind(wx.EVT_MENU, self.OnCenterDistanceCalcCompare, m_showObjects)
m_showObjects = menu.Append(-1, "Ek1", "Ek1")
self.Bind(wx.EVT_MENU, self.OnEkCalc1, m_showObjects)
m_showObjects = menu.Append(-1, "Ek2", "Ek2")
self.Bind(wx.EVT_MENU, self.OnEkCalc2, m_showObjects)
m_showObjects = menu.Append(-1, "Ek total", "Ek total")
self.Bind(wx.EVT_MENU, self.OnEkCalcTotal, m_showObjects)
m_showObjects = menu.Append(-1, "Make images", "Make images")
self.Bind(wx.EVT_MENU, self.OnMakeImages, m_showObjects)
menuBar.Append(menu, "&All (calc)")
menu = wx.Menu()
m_showObjects = menu.Append(-1, "Angular moment 1", "Angular moment 1")
self.Bind(wx.EVT_MENU, self.OnAngMomExt1, m_showObjects)
m_showObjects = menu.Append(-1, "Angular moment 2", "Angular moment 2")
self.Bind(wx.EVT_MENU, self.OnAngMomExt2, m_showObjects)
m_showObjects = menu.Append(-1, "Angular moment both", "Angular moment both")
self.Bind(wx.EVT_MENU, self.OnAngMomExtAll, m_showObjects)
m_showObjects = menu.Append(-1, "Center distance", "Center distance")
self.Bind(wx.EVT_MENU, self.OnCenterDistanceExt, m_showObjects)
m_showObjects = menu.Append(-1, "Center of mass distance", "Center of mass distance")
self.Bind(wx.EVT_MENU, self.OnCenterOfMassDistanceExt, m_showObjects)
m_showObjects = menu.Append(-1, "Center distance compare", "Center distance compare")
self.Bind(wx.EVT_MENU, self.OnCenterDistanceExtCompare, m_showObjects)
m_showObjects = menu.Append(-1, "Energy", "Energy")
self.Bind(wx.EVT_MENU, self.OnExtEnergy, m_showObjects)
m_showObjects = menu.Append(-1, "Virial Th.", "Virial Th.")
self.Bind(wx.EVT_MENU, self.OnExtVirialTh, m_showObjects)
m_showObjects = menu.Append(-1, "Treelog AM", "Treelog AM")
self.Bind(wx.EVT_MENU, self.OnExtTreelogAM, m_showObjects)
m_showObjects = menu.Append(-1, "Treelog cmpos", "Treelog cmpos")
self.Bind(wx.EVT_MENU, self.OnExtTreelogCMPos, m_showObjects)
m_showObjects = menu.Append(-1, "Treelog cmvel", "Treelog cmvel")
self.Bind(wx.EVT_MENU, self.OnExtTreelogCMVel, m_showObjects)
m_showObjects = menu.Append(-1, "RM1", "RM1")
self.Bind(wx.EVT_MENU, self.OnExtRm1, m_showObjects)
m_showObjects = menu.Append(-1, "RM2", "RM2")
self.Bind(wx.EVT_MENU, self.OnExtRm2, m_showObjects)
menuBar.Append(menu, "&All (ext)")
menu = wx.Menu()
m_showObjects = menu.Append(-1, "Angular moment 1", "Angular moment 1")
self.Bind(wx.EVT_MENU, self.OnAngMomCompare1, m_showObjects)
m_showObjects = menu.Append(-1, "Angular moment 2", "Angular moment 2")
self.Bind(wx.EVT_MENU, self.OnAngMomCompare2, m_showObjects)
m_showObjects = menu.Append(-1, "Angular moment both", "Angular moment both")
self.Bind(wx.EVT_MENU, self.OnAngMomCompareAll, m_showObjects)
m_showObjects = menu.Append(-1, "Center distance", "Center distance")
self.Bind(wx.EVT_MENU, self.OnCenterDistanceCompare, m_showObjects)
m_showObjects = menu.Append(-1, "Center of mass distance", "Center of mass distance")
self.Bind(wx.EVT_MENU, self.OnCenterOfMassDistanceCompare, m_showObjects)
m_showObjects = menu.Append(-1, "Ek", "Ek")
self.Bind(wx.EVT_MENU, self.OnEkCompare, m_showObjects)
menuBar.Append(menu, "&All (comp)")
self.SetMenuBar(menuBar)
self.statusbar = self.CreateStatusBar()
self.figure = Figure(figsize=(800 / 80.0, 600 / 80.0))
#SCROLLING
#self.scrolling = wx.ScrolledWindow( self )
#self.scrolling.SetSize((800,600))
#self.scrolling.SetScrollRate(1,1)
#self.scrolling.EnableScrolling(True,True)
#self.scrolling.SetScrollbars(1, 1, 600, 400)
#self.canvas = FigureCanvas(self.scrolling, -1, self.figure)
hpanel = wx.Panel(self)
hpanel.SetSize(self.GetSize())
vpanel = wx.Panel(self)
self.canvas = FigureCanvas(vpanel, -1, self.figure)
self.axes = self.figure.add_subplot(111, projection='3d')
#self.canvas.SetSize((800,600))
self.canvas.mpl_connect('pick_event', self.onpick2)
self.sizer = wx.BoxSizer(wx.VERTICAL)
hsizer = wx.BoxSizer(wx.HORIZONTAL)
vsizer = wx.BoxSizer(wx.VERTICAL)
hpanel.SetSizer(hsizer)
vpanel.SetSizer(vsizer)
vsizer.Add(self.canvas, 0, wx.ALL, 10)
hsizer.Add(vpanel)
self.sizer.Add(vpanel, 0, wx.ALL, 10)
#group ranges panel
self.pickDialog = PickDialog(hpanel, self)
hsizer.Add(self.pickDialog, 0, wx.ALL, 10)
# TOOLBAR comment this out for no toolbar
self.toolbar = NavigationToolbar2Wx(self.canvas)
self.toolbar.Realize()
# # On Windows platform, default window size is incorrect, so set
# # toolbar width to figure width.
# tw, th = self.toolbar.GetSizeTuple()
# fw, fh = self.canvas.GetSizeTuple()
# # By adding toolbar in sizer, we are able to put it at the bottom
# # of the frame - so appearance is closer to GTK version.
# # As noted above, doesn't work for Mac.
# self.toolbar.SetSize(wx.Size(fw, th))
vsizer.Add(self.toolbar, 0, wx.LEFT | wx.EXPAND)
self.SetToolBar(self.toolbar)
# update the axes menu on the toolbar
self.toolbar.update()
self.SetSizer(self.sizer)
hsizer.Layout()
hpanel.Fit()
self.sizer.Layout()
self.Fit()
#TODO not hardcode this
self.SetSize((1000,800))
#changed toolbar?
#self.SetSize((1000,853))
self.plotMyData()
#TODO why legend does not show first line plotted
self.repaint()
def sliderUpdateVel(self, event):
print("Update vel slider")
self.multVel = float(event.GetEventObject().GetValue())
def sliderUpdateAM(self, event):
print("update am slider")
self.multAM = float(event.GetEventObject().GetValue())
def readFirstModel(self, event):
print("goto first")
self.currentModelNumberIndex = 0
self.reloadModel()
def readPrevModel(self, event):
print("goto prev")
if self.currentModelNumberIndex >0:
self.currentModelNumberIndex -=1
self.reloadModel()
def readNextModel(self, event):
print("goto next")
if self.currentModelNumberIndex < len(self.modelNumbers)-1:
self.currentModelNumberIndex +=1
self.reloadModel()
def readLastModel(self, event):
print("goto last")
self.currentModelNumberIndex = len(self.modelNumbers)-1
self.reloadModel()
#select indices begin
def selectObject(self, objNum, testVis = True):
lastindex = 0
indices1 = []
for item in sorted(self.ranges.items()):
#print("Object is %d" % item[1][1])
if(item[1][1] == objNum and ((testVis and item[1][0]) or not testVis) ):
indices1+=range(lastindex, item[0])
lastindex = item[0]
return indices1
def selectObjects(self, testVis = True, returnStr = False):
lastindex = 0
indices1 = []
indices2 = []
for item in sorted(self.ranges.items()):
#print("Object is %d" % item[1][1])
if(item[1][1] == 1 and ((testVis and item[1][0]) or not testVis) ):
indices1+=range(lastindex, item[0])
elif(item[1][1] == 2 and ((testVis and item[1][0]) or not testVis) ):
indices2+=range(lastindex, item[0])
lastindex = item[0]
return indices1, indices2
def selectMultipleObjects(self, testVis = True, returnStr = False):
lastindex = 0
indices = {}
for k in self.ranges.keys():
v = self.ranges[k]
indices[v[1]] = []
for item in sorted(self.ranges.items()):
#print("Object is %d" % item[1][1])
if((testVis and item[1][0]) or not testVis):
indices[item[1][1]]+=range(lastindex, item[0])
lastindex = item[0]
return indices
def selectObjectsAll(self, testVis = True, returnStr = False):
lastindex = 0
indices1 = []
for item in sorted(self.ranges.items()):
#print("Object is %d" % item[1][1])
if( (item[1][0] and testVis) or not testVis):
indices1+=range(lastindex, item[0])
lastindex = item[0]
return indices1
#select indices end
#select indices as str begin
def selectObjectStr(self, objNum, testVis = True):
indStr = ""
for item in sorted(self.ranges.items()):
if(item[1][1] == objNum and ((testVis and item[1][0]) or not testVis) ):
indStr+="-%s" % str(item[0])
return indStr
def selectObjectsStr(self, testVis = True):
indStr = ""
for item in sorted(self.ranges.items()):
if((testVis and item[1][0]) or not testVis) :
indStr+="-%s" % str(item[0])
return indStr
#select indices as str end
#center begin
def getCenter(self, indices1):
#TODO needed?
if len(indices1)==0 :
return [0,0,0]
xcenter = np.mean(self.data[indices1,0])
ycenter = np.mean(self.data[indices1,1])
zcenter = np.mean(self.data[indices1,2])
return np.array([xcenter,ycenter,zcenter])
#center END
#center of mass
def centerOfMass(self, objNum):
lastindex = 0
m1 = 0
mtot = 0
for item in sorted(self.ranges.items()):
#print("Object is %d" % item[1][1])
if(item[1][1] == objNum and item[1][0] ):
m1+=self.data[lastindex:item[0],:].sum(axis=0) * item[1][2]
mtot+=(item[0] - lastindex) * item[1][2]
lastindex = item[0]
return m1/mtot
def centerOfMassBoth(self):
lastindex = 0
m1 = 0
m2 = 0
mtot1 = 0
mtot2 = 0
for item in sorted(self.ranges.items()):
#print("Object is %d" % item[1][1])
if(item[1][1] == 1 and item[1][0] ):
m1+=self.data[lastindex:item[0],:].sum(axis=0) * item[1][2]
mtot1+=(item[0] - lastindex) * item[1][2]
elif(item[1][1] == 2 and item[1][0]):
m2+=self.data[lastindex:item[0],:].sum(axis=0) * item[1][2]
mtot2+=(item[0] - lastindex) * item[1][2]
lastindex = item[0]
return m1/mtot1, m2/mtot2
def centerOfMassAll(self):
lastindex = 0
m1 = 0
mtot = 0
for item in sorted(self.ranges.items()):
#print("Object is %d" % item[1][1])
if(item[1][0]):
m1+=self.data[lastindex:item[0],:].sum(axis=0) * item[1][2]
mtot+=(item[0] - lastindex) * item[1][2]
lastindex = item[0]
return m1/mtot
#center of mass END
#angular mom
def angMom(self, objNumber, testVis = True):
lastindex = 0
am = np.zeros(3)
cm = self.centerOfMass(objNumber)
for item in sorted(self.ranges.items()):
#print("Object is %d" % item[1][1])
if(item[1][1] == objNumber and ( (testVis and item[1][0]) or not testVis) ):
massPart = item[1][2]
indices =np.arange(lastindex, item[0])
#print("AM")
#print(am.shape)
am+=massPart * np.cross(self.data[indices] - cm , self.data[indices + self.numpart]).sum(axis=0)
lastindex = item[0]
return am
def angMomTotal(self, testVis = True):
lastindex = 0
am = np.zeros(3)
cm = self.centerOfMassAll()
for item in sorted(self.ranges.items()):
#print("Object is %d" % item[1][1])
if((item[1][0] and testVis) or not testVis):
massPart = item[1][2]
indices =np.arange(lastindex, item[0])
am+=massPart * np.cross(self.data[indices] - cm, self.data[indices + self.numpart]).sum(axis=0)
lastindex = item[0]
return am
#angular mom end
#Ek start
def ek(self, objNumber):
lastindex = 0
ek = 0
for item in sorted(self.ranges.items()):
if(item[1][1] == objNumber and item[1][0] ):
massPart = item[1][2]
indices =np.arange(lastindex, item[0])
ek+=massPart * np.sum(self.data[indices + self.numpart,0]**2 + self.data[indices + self.numpart,1]**2 + self.data[indices + self.numpart,2]**2 )
lastindex = item[0]
return ek * 0.5
def ekAll(self, testVis=True):
lastindex = 0
ek = 0
for item in sorted(self.ranges.items()):
if( (item[1][0] and testVis) or not testVis):
massPart = item[1][2]
indices =np.arange(lastindex, item[0])
ek+=massPart * np.sum(self.data[indices + self.numpart,0]**2 + self.data[indices + self.numpart,1]**2 + self.data[indices + self.numpart,2]**2 )
lastindex = item[0]
return ek * 0.5
#Ek end
def performForAllModels(self, f, txtfn):
print("PERF MODELS useCalcValues = %s" % str(useCalcValues))
from os.path import isfile
if useCalcValues and isfile(txtfn):
print("Using file %s" % txtfn)
return np.loadtxt(txtfn)
mydata = self.data
norapyam = np.zeros(len(self.modelNumbers))
i=0
for i in range(len(self.modelNumbers)):
filename = self.globPattern.replace("*", str(self.modelNumbers[i]) )
print("FILENAME %s" % filename)
self.data = np.loadtxt(filename)
norapyam[i] = f()
self.data = mydata
if useCalcValues:
print("Saving file %s" % txtfn)
np.savetxt(txtfn, norapyam)
return norapyam
def calcAngMom1(self, testVis=True):
def func():
#print("CALLING FUNC")
am = self.angMom(1, testVis)
return np.sqrt(am[0]**2+am[1]**2+am[2]**2)
return self.performForAllModels(func, "am1%s.txt" % (self.selectObjectStr(1, testVis)))
def calcAngMom2(self, testVis = True):
def func():
#print("CALLING FUNC")
am = self.angMom(2, testVis)
return np.sqrt(am[0]**2+am[1]**2+am[2]**2)
return self.performForAllModels(func, "am2%s.txt" % (self.selectObjectStr(2, testVis)))
def calcAngMomTotal(self, testVis = True):
def func():
#print("CALLING FUNC")
am = self.angMomTotal(testVis)
return np.sqrt(am[0]**2+am[1]**2+am[2]**2)
return self.performForAllModels(func, "am3%s.txt" % (self.selectObjectsStr( testVis)))
def calcCenterDistance(self):
indices1, indices2 = self.selectObjects()
def func():
center1 = self.getCenter(indices1)
center2 = self.getCenter(indices2)
return np.sqrt((center1[0] - center2[0] )**2 + (center1[1] - center2[1] )**2 + (center1[2] - center2[2])**2)
return self.performForAllModels(func, "medcent%s.txt" % ( self.selectObjectsStr() ))
def calcCenterOfMassDistance(self):
def func():
center1, center2 = self.centerOfMassBoth()
return np.sqrt((center1[0] - center2[0] )**2 + (center1[1] - center2[1] )**2 + (center1[2] - center2[2])**2)
return self.performForAllModels(func, "cmcent%s.txt" % ( self.selectObjectsStr() ))
def calcEk1(self):
return self.performForAllModels(lambda: self.ek(1), "ek1%s.txt" % (self.selectObjectStr(1) ))
def calcEk2(self):
return self.performForAllModels(lambda: self.ek(2), "ek2%s.txt" % ( self.selectObjectStr(2) ))
def calcEkTotal(self, testVis = True):
return self.performForAllModels(lambda: self.ekAll(testVis), "ek3%s.txt" % ( self.selectObjectsStr( testVis) ))
def plotRm(self, objNumber):
files = ["0.20" , "0.50", "0.80", "0.90", "0.99"]
indices = self.selectObject(objNumber)
from extern import getrm
outFolder = getrm(self.modelNumbers, min(indices)+1, max(indices)+1)
plotData = []
import os.path
for f in files:
data = np.loadtxt(os.path.join(outFolder,f))
plotData.append([data[:,0], data[:,1], f])
plot2d(plotData,"RM%d" % objNumber)
def OnExtRm1(self, event):
self.plotRm(1)
def OnExtRm2(self, event):
self.plotRm(2)
def OnMakeImages(self, event):
import os
#TODO do not display images : no repaint would work?
#matplotlib.use('Agg')
def createFolder(dirname_base="out"):
dirExists = True
i = 0
dirname = "%s_%i" % (dirname_base, i)
while os.path.exists(dirname):
i +=1
dirname = "%s_%i" % (dirname_base, i)
os.mkdir(dirname)
return dirname
dirname = createFolder("outImages")
oldCNI = self.currentModelNumberIndex
for i in range(len(self.modelNumbers)):
self.currentModelNumberIndex = i
self.reloadModel()
#something has changed(toolbar?) and imgs will be 1000x697!
#self.figure.savefig(os.path.join(dirname, "Fig%03d" % self.currentModelNumberIndex))
self.figure.savefig(os.path.join(dirname, "Fig%03d" % self.currentModelNumberIndex), figsize=(12.5,9.375), dpi=80)
self.currentModelIndex = oldCNI
self.reloadModel()
#matplotlib.use('WXAgg')
def OnAngMom1(self, event):
center = self.getCenter(self.selectObject(1))
am = self.angMom(1)
print("AM1 ")
print(am)
self.drawVector(center, center + self.multAM * am)
def OnAngMomCalc1(self, event):
import matplotlib.pyplot as plt
plt.figure(1)
plt.title("AM1")
plt.plot(range(len(self.modelNumbers)), self.calcAngMom1(), 'k')
plt.draw()
plt.show(block=False)
def OnAngMomCalc2(self, event):
import matplotlib.pyplot as plt
plt.figure(1)
plt.cla()
plt.title("AM2")
plt.plot(range(len(self.modelNumbers)), self.calcAngMom2(), 'k')
plt.draw()
plt.show(block=False)
def OnAngMomCalcTotal(self, event):
import matplotlib.pyplot as plt
plt.figure(1)
plt.cla()
plt.title("AM Total")
plt.plot(range(len(self.modelNumbers)), self.calcAngMomTotal(), 'k')
plt.draw()
plt.show(block=False)
def OnEkCalc1(self, event):
plot2d([range(len(self.modelNumbers)), self.calcEk1()], "Ek1" )
def OnEkCalc2(self, event):
plot2d([range(len(self.modelNumbers)), self.calcEk2()], "Ek2")
def OnEkCalcTotal(self,event):
plot2d([range(len(self.modelNumbers)), self.calcEkTotal()], "Ek total")
def OnEkCompare(self, event):
from extern import getTreelogE
ee = getTreelogE()
plot2d([[range(len(self.modelNumbers)), self.calcEkTotal(False), "calc"], [ee[0], ee[1][:,1], "treelog"]], "Ek total compare")
def OnExtEnergy(self, event):
from extern import getTreelogE
res = getTreelogE()
plot2d([ [res[0], res[1][:,0] , "Et"], [res[0], res[1][:,1] , "Ek"], [res[0], res[1][:,2] , "Ep"]], "Energies from TREELOG")
def OnExtVirialTh(self, event):
from extern import getTreelogE
res = getTreelogE()
plot2d([res[0], 2 * res[1][:,1] + res[1][:,2]], "Virial Th from TREELOG(2Ek+Ep)")
def OnExtTreelogAM(self, event):
from extern import getTreelogAM
res = getTreelogAM()
am = np.sqrt(res[1][:,0]**2 + res[1][:,1]**2 + res[1][:,2]**2)
#plot without AM **2
plot2d([res[0], am], "Treelog am")
#plot WITH AM **2
# from extern import getAngMomAll
# restam = getAngMomAll()
# amtam = np.sqrt(restam[1]**2 + restam[2]**2 + restam[3]**2)
# plot2d([[res[0], am, "TREELOG"],[restam[0],amtam, "TREEAM"]], "Ext AM")
def OnExtTreelogCMPos(self, event):
from extern import getTreelogCMPos
res = getTreelogCMPos()
am = np.sqrt(res[1][:,0]**2 + res[1][:,1]**2 + res[1][:,2]**2)
#plot WITHOUT treelog
#plot2d([res[0], am], "Distance CM from origin")
#plot WITH treelog
from extern import getCMCenterAll
plot2d([[range(len(self.modelNumbers)), getCMCenterAll(self.modelNumbers), "NORA"], [res[0], am, "TREELOG"]], "Ext CMPos")
def OnExtTreelogCMVel(self, event):
from extern import getTreelogCMVel
res = getTreelogCMVel()
am = np.sqrt(res[1][:,0]**2 + res[1][:,1]**2 + res[1][:,2]**2)
plot2d([res[0], am], "CM velocity from treelog")
#TODO repeated code in the following 3 functions
def OnAngMomCompare1(self, event):
print("AM COMPARE")
from extern import getAngMom
noraam = getAngMom(0)
plot2d([[range(len(self.modelNumbers)), self.calcAngMom1(False), "calc"],[noraam[0], noraam[1], "TREEAM"]], 'AM1 Compare')
def OnAngMomExt1(self, event):
print("AM EXT")
from extern import getAngMom
noraam = getAngMom(0)
plot2d([noraam[0], noraam[1]], 'AM1 from TREEAM')
def OnAngMomCompare2(self, event):
print("AM COMPARE 2")
from extern import getAngMom
noraam = getAngMom(1)
plot2d([[range(len(self.modelNumbers)), self.calcAngMom2(False), "calc"],[noraam[0], noraam[1], "TREEAM"]], 'AM2 Compare')
def OnAngMomExt2(self, event):
print("AM EXT 2")
from extern import getAngMom
noraam = getAngMom(1)
plot2d([noraam[0], noraam[1]], 'AM2 from TREEAM')
def OnAngMomCompareAll(self, event):
print("AM COMPARE TOTAL")
#COMPARE with treeam
from extern import getAngMom
noraam = getAngMom(2)
plot2d([[range(len(self.modelNumbers)), self.calcAngMomTotal(False), "calc"],[noraam[0], noraam[1], "TREEAM"] ], "AM Total Comp")
# #compare with treelog
# from extern import getTreelogAM
# res = getTreelogAM()
# am = np.sqrt(res[1][:,0]**2 + res[1][:,1]**2 + res[1][:,2]**2)
# plot2d([[range(len(self.modelNumbers)), self.calcAngMomTotal(False), "calc"],[res[0], am, "TREELOG"] ], "AM comp")
# #selfam = np.sqrt(self.calcAngMomTotal(False)**2 + self.calcAngMom1(False)**2 + self.calcAngMom2(False)**2 )
# #plot2d([[range(len(self.modelNumbers)), selfam, "calc"],[res[0], am, "TREELOG"] ], "AM comp")
def OnAngMomExtAll(self, event):
print("AM EXT")
from extern import getAngMom
noraam = getAngMom(2)
plot2d([noraam[0], noraam[1]], 'AM Total from TREEAM')
def OnCenterDistanceCalc(self, event):
print("MEDCENT CALC")
plot2d([range(len(self.modelNumbers)), self.calcCenterDistance()], "Medcent")
def OnCenterOfMassDistanceCalc(self, event):
print("CMENT CALC")
plot2d([range(len(self.modelNumbers)), self.calcCenterOfMassDistance()], "CM")
def OnCenterDistanceCalcCompare(self, event):
print("Center Distance CALC COMPARE")
plot2d([[range(len(self.modelNumbers)), self.calcCenterDistance(), "Medcent"], [range(len(self.modelNumbers)), self.calcCenterOfMassDistance(), "CM"]], "Center distance compare")
def OnCenterDistanceExt(self, event):
print("MEDCENT EXT")
indices1, indices2 = self.selectObjects()
from extern import getMedcentDistance
plot2d([range(len(self.modelNumbers)), getMedcentDistance(self.modelNumbers, min(indices1)+1, max(indices1)+1, min(indices2)+1, max(indices2)+1)], "medcent Nora" )
def OnCenterDistanceCompare(self, event):
print("MEDCENT COMPARE")
indices1, indices2 = self.selectObjects()
from extern import getMedcentDistance
#plot WITHOUT treeorb dist
plot2d([[range(len(self.modelNumbers)), self.calcCenterDistance(), "calc" ], [range(len(self.modelNumbers)),getMedcentDistance(self.modelNumbers, min(indices1)+1, max(indices1)+1, min(indices2)+1, max(indices2)+1), "nora medcent"] ], "medcent compare")
#plot WITH treeorb dist
#from extern import getTreeorbDist
#d3 = getTreeorbDist()
#plot2d([[range(len(self.modelNumbers)), self.calcCenterDistance(), "calc" ], [range(len(self.modelNumbers)),getMedcentDistance(self.modelNumbers, min(indices1)+1, max(indices1)+1, min(indices2)+1, max(indices2)+1), "nora medcent"] , [d3[0], d3[1], "Treeorb"] ], "medcent compare")
def OnCenterOfMassDistanceExt(self, event):
print("CMCENT EXT")
indices1, indices2 = self.selectObjects()
from extern import getCMcentDistance
plot2d([range(len(self.modelNumbers)), getCMcentDistance(self.modelNumbers, min(indices1)+1, max(indices1)+1, min(indices2)+1, max(indices2)+1)], "CM Nora" )
def OnCenterOfMassDistanceCompare(self, event):
print("CMCENT COMPARE")
from extern import getCMcentDistance
indices1, indices2 = self.selectObjects()
#plot WITHOUT treeorb dist
plot2d([[range(len(self.modelNumbers)), self.calcCenterOfMassDistance(), "calc"],[range(len(self.modelNumbers)), getCMcentDistance(self.modelNumbers, min(indices1)+1, max(indices1)+1, min(indices2)+1, max(indices2)+1), "nora"]], "CM compare" )
#plot WITH treeorb dist
#from extern import getTreeorbDist
#d3 = getTreeorbDist()
#plot2d([[range(len(self.modelNumbers)), self.calcCenterOfMassDistance(), "calc" ], [range(len(self.modelNumbers)),getCMcentDistance(self.modelNumbers, min(indices1)+1, max(indices1)+1, min(indices2)+1, max(indices2)+1), "nora"] , [d3[0], d3[1], "Treeorb"] ], "CM compare")
def OnCenterDistanceExtCompare(self, event):
print("EXT center distance COMPARE")
indices1, indices2 = self.selectObjects()
from extern import getMedcentDistance, getCMcentDistance
plot2d([[range(len(self.modelNumbers)), getMedcentDistance(self.modelNumbers, min(indices1)+1, max(indices1)+1, min(indices2)+1, max(indices2)+1), "medcent"],[range(len(self.modelNumbers)), getCMcentDistance(self.modelNumbers, min(indices1)+1, max(indices1)+1, min(indices2)+1, max(indices2)+1), "cmcent"]], "NORA center distance" )
#END
def OnAngMom2(self, event):
center = self.getCenter(self.selectObject(2))
am = self.angMom(2)
print("AM ")
print(am)
self.drawVector(center, center + self.multAM * am)
def OnAngMomTotal(self, event):
center = self.getCenter(self.selectObjectsAll())
am = self.angMomTotal()
print("AM ")
print(am)
self.drawVector(center, center + slef.multAM * am)
def drawVector(self, v1, v2):
if not self.vector is None:
self.vector.remove()
self.vector = Arrow3D([v1[0],v2[0]],[v1[1], v2[1]],[v1[2], v2[2]], mutation_scale=20, lw=2, arrowstyle="-|>", color="r")
self.axes.add_artist(self.vector)
self.repaint()
def OnCenterDistance(self, event):
indices1, indices2 = self.selectObjects()
center1 = self.getCenter(indices1)
center2 = self.getCenter(indices2)
print("Center distance is %e" % ((center1[0] - center2[0] )**2 + (center1[1] - center2[1] )**2 + (center1[2] - center2[2])**2)**0.5 )
self.drawVector(center1, center2)
def OnCenterMassDistance(self, event):
center1, center2 = self.centerOfMassBoth()
print("Center of mass distance is %e" % ((center1[0] - center2[0] )**2 + (center1[1] - center2[1] )**2 + (center1[2] - center2[2])**2)**0.5 )
self.drawVector(center1, center2)
def onpick2(self,event):
thisline = event.artist
print("PICK")
ind = event.ind[0]
print("vertss3d")
x,y,z=thisline._verts3d
print("%2.3f,%2.3f,%2.3f" % (x[ind],y[ind],z[ind]))
for i in range(self.numpart):
if self.data[i,0] == x[ind] and self.data[i,1] == y[ind] and self.data[i,2] == z[ind]:
print("Found index in data %d" % i)
print("velocity is vx=%e,vy=%e,vz=%e" % (self.data[self.numpart+i,0], self.data[self.numpart+i,1], self.data[self.numpart+i,2]))
self.drawVector([x[ind],y[ind], z[ind]],[x[ind] +self.multVel* self.data[self.numpart+i,0], y[ind]+self.multVel* self.data[self.numpart+i,1], z[ind]+self.multVel*self.data[self.numpart+i,2] ] )
break
#z = thisline.get_zdata()[ind]
#print x, y, z
##SCROLLING
#def OnSize(self, event):
# self.scrolling.SetSize(self.GetClientSize())
def OnPaint(self, event):
print "ON paint EVENT repaint"
self.repaint()
def repaint(self):
self.canvas.draw()
def OnClose(self, event):
dlg = wx.MessageDialog(self,
"Do you really want to close this application?",
"Confirm Exit", wx.OK|wx.CANCEL|wx.ICON_QUESTION)
result = dlg.ShowModal()