Enchancing coevolutionary results with random forests.

This protocol assumes you have HHBlits and GREMLIN installed. Run make build in each of the directories in order

Follow the instructions in /preprocessing/pdb to prepare a set of fasta and pdb files.

GREMLIN is packaged with this program. The entire GREMLIN directory is released under a Attribution-NonCommercial-ShareAlike 3.0 Unported licence.

Train the extremely random forests with scikit-learn.

Test structure files with a simple C-alpha folding model.

Run post-processing analysis.

Presention on research given 2/4/2016 ENHANCING THE COEVOLUTIONARY SIGNAL