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arFBA (allosteric regulation FBA)

Implementation of the arFBA method published in:

Machado, D., Herrgård, M. J., & Rocha, I. (2015). Modeling the contribution of allosteric regulation for flux control in the central carbon metabolism of E. coli. Frontiers in bioengineering and biotechnology, 3.

http://journal.frontiersin.org/article/10.3389/fbioe.2015.00154/full

Dependencies:

  • libsbml
  • gurobi
  • framed

Note that framed is still under development and might undergo major changes in the future. For compatibility please use the following version: https://github.com/cdanielmachado/framed/tree/v0.1-beta

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Allosteric Regulation FBA (simulation method)

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