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calculate the topological dimension of protein interaction networks (active CI)

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florianst/fractaldim_proteininteract

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Topological Fractal Dimension of Protein-Protein Interaction Networks

We scrutinise protein-protein interaction data from various organisms, report on several centrality measures for the highest-ranking proteines and use box-covering algorithms to determine the non-integer topological dimension of the resulting interaction network. We compare different algorithms and observe that higher-order organisms do not generally show a higher topological dimension.

For an in-depth report in PNAS-style, see report/main.pdf.

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pip install .

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python setup.py develop

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