This is version 1.1.0 Pipeline for CLIP-seq Analysis.
- Galaxy site: http://pipeclip.qbrc.org/
- Publication: http://genomebiology.com/2014/15/1/R18
- Google Code site: https://code.google.com/p/pipe-clip/
Requirement:
- Python 2.7;
- R 3.0 and above;
- Perl 5 and above;
- Python packages: pysam;
- R packages: MASS,VGAM and their dependencies.
- Other packages: HOMER and annotation files
Installation tips:
- Make sure HOMER are in your PATH. You can test this by type "annotatePeaks.pl" from anywhere and you should get help information of this command.
Contact: beibei.chen@utsouthwestern.edu