This is a repository of code developed in the Zhuang Lab for analysis of STORM movies.

Some algorithms were developed in other groups and ported to Python. In this case the license applies only to our implementation of the code. If you plan to use the algorithm in a commercial product you should discuss this with the original developers.

The code is now located in the storm_analysis folder.

The code should work with both Python2.7 and Python3.

Settings file and splines for the 2016 SMLM Challenge are here (261MB).

You will need Python and you will need the storm-analysis directory in your Python path.

Pre-compiled libraries (using MinGW) are provided for 64-bit Windows. For other operating systems you will need to compile the libraries and executables yourself as described in the README files in the relevant folders. There are also compile_bat.bat files which have examples of how to compile everything.

To use the software on 64-bit Windows you will need the windows_dll directory to be in your PATH. See the setup_paths.bat for an example of how to do this.

Questions should be addressed to Hazen Babcock (hbabcock at fas.harvard.edu)