Author: Khalid Mahmood (khalid.mahmood@unimelb.edu.au)

vcf_annotation_pipeline is a software pipeline that take as input a raw vcf file and performs a series of operations to filtering and annotate the variants. The tasks are:

1. Normalize the vcf file.
2. Decompose vcf file.
3. Filter common variants e.g. 1000 genome CEU with maf < 1%.
4. Annotate using VEP.
5. Annotate using SnpEff.
6. Annotate using VarPub
7. Remove

vcf_annotation_pipeline requires the following tools.

'vcf_annotation_pipeline' requires the following datasets.

3 Clause BSD License. See LICENSE.txt in source repository.