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PySLIC: Python Subcellular Location Image Classifier

This is a re-implementation in Python of the Murphy Lab image classification code.

INSTALL

python setup.py install

or

python setup.py install --prefix=<SOME_PATH_TO_INSTALL_TO>

DEPENDENCIES

Hard Dependencies

These are needed for Python 2.5 to run.

The dependencies are fairly standard libraries:

On ubuntu, you can use the following command to install dependencies:

sudo aptitude install python-numpy python-scipy

Citation

PySLIC does not have a paper associated with it, but is a wrapper around mahotas. Thus, if you use this in a scientific publication, please cite:

Luis Pedro Coelho Mahotas: Open source software for scriptable computer vision in Journal of Open Research Software, vol 1, 2013. DOI

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