Name		Name	Last commit message	Last commit date
Latest commit History 642 Commits
.vscode		.vscode
2xov_eval		2xov_eval
AAWSEM		AAWSEM
R		R
TMalign		TMalign
abeta		abeta
archive		archive
backup		backup
crystal_structures		crystal_structures
database		database
ff_contact		ff_contact
gremlin		gremlin
jpredMassSubmitSchedule		jpredMassSubmitSchedule
myShellScript		myShellScript
notebook		notebook
optimization		optimization
parameters		parameters
pdbs		pdbs
plot_scripts		plot_scripts
pulling		pulling
script		script
small_script		small_script
wham_analysis		wham_analysis
.DS_Store.orig		.DS_Store.orig
.Rhistory		.Rhistory
._generate_optimization_decoys.py		._generate_optimization_decoys.py
._mix_gamma.py		._mix_gamma.py
._optimization_prepare.py		._optimization_prepare.py
.gitignore		.gitignore
CalcQFrag.py		CalcQFrag.py
CalcQValue_based_on_crystal.py		CalcQValue_based_on_crystal.py
CalcQnQc.py		CalcQnQc.py
GenSswight_from_mass_jpred.py		GenSswight_from_mass_jpred.py
IndexPdb.py		IndexPdb.py
LICENSE		LICENSE
LammpsPDBToCoordinates.py		LammpsPDBToCoordinates.py
MultCha_prepFrags_index_HO.py		MultCha_prepFrags_index_HO.py
Notes.py		Notes.py
PDBToCoordinates.py		PDBToCoordinates.py
Pdb2Gro.py		Pdb2Gro.py
Pdb2GroLib.py		Pdb2GroLib.py
README.md		README.md
VectorAlgebra.py		VectorAlgebra.py
alignTwoPdb.py		alignTwoPdb.py
bug_fix.sh		bug_fix.sh
calculate_rmsd.py		calculate_rmsd.py
cancel_jobs.py		cancel_jobs.py
ccp.py		ccp.py
chimera.py		chimera.py
compute-pmf-externalevs.py		compute-pmf-externalevs.py
compute-pmf-externalevs_local.py		compute-pmf-externalevs_local.py
compute-pmf.py		compute-pmf.py
compute_energy.py		compute_energy.py
compute_energy_helperFunctions.py		compute_energy_helperFunctions.py
compute_phis.py		compute_phis.py
compute_pmf_py3.py		compute_pmf_py3.py
config.py		config.py
continue_run.py		continue_run.py
convert_to_simulation_format.py		convert_to_simulation_format.py
create_membrane_protein_folding_project_in_template.in		create_membrane_protein_folding_project_in_template.in
create_project.py		create_project.py
create_project_in_crystal_template.in		create_project_in_crystal_template.in
create_project_in_template.in		create_project_in_template.in
create_zim.py		create_zim.py
data_read.py		data_read.py
davinci_gg.py		davinci_gg.py
download.py		download.py
energy_PdbCoords2Lammps.sh		energy_PdbCoords2Lammps.sh
energy_inFilePattern.data		energy_inFilePattern.data
experiment_analysis.py		experiment_analysis.py
experiment_functions.py		experiment_functions.py
fasta2pdb.pml		fasta2pdb.pml
fasta2pdb.py		fasta2pdb.py
fasta2pdb.py.back		fasta2pdb.py.back
final_move.py		final_move.py
fix_backbone.cpp		fix_backbone.cpp
fix_backbone.h		fix_backbone.h
fix_qbias_coeff.data		fix_qbias_coeff.data
freeEnergy_run.py		freeEnergy_run.py
freeEnergy_run_continue.py		freeEnergy_run_continue.py
frustratometer_analysis.py		frustratometer_analysis.py
frustratometer_run.py		frustratometer_run.py
generate_decoys.py		generate_decoys.py
generate_gamma.py		generate_gamma.py
generate_lowest_energy_frag.py		generate_lowest_energy_frag.py
generate_optimization_decoys.py		generate_optimization_decoys.py
getSize.py		getSize.py
getTransmembraneRegions.py		getTransmembraneRegions.py
gg.py		gg.py
gg_server.py		gg_server.py
longRangeInteraction.py		longRangeInteraction.py
lowest_energy.py		lowest_energy.py
make_metadata.py		make_metadata.py
make_metadata_2.py		make_metadata_2.py
make_metadata_3.py		make_metadata_3.py
make_metadata_back.py		make_metadata_back.py
mix_gamma.py		mix_gamma.py
movie.py		movie.py
msa_compute_phis.py		msa_compute_phis.py
msa_compute_phis_specific_decoys.py		msa_compute_phis_specific_decoys.py

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