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x-submission.py
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x-submission.py
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from __future__ import print_function
import csv
import numpy as np
from model import get_model
from utils import real_to_cdf, preprocess
import os
DATA_DIR = '/mnt/dsb2-keras/dry-run/'
def load_validation_data():
"""
Load validation data from .npy files.
"""
X = np.load(os.path.join(DATA_DIR, 'pre-X-validate.npy'))
m = np.load(os.path.join(DATA_DIR, 'pre-m-validate.npy'))
ids = m[:, 0].astype(int)
# let's take mm2
mult = m[:, 1]
# let's take mm3
# mult = m[:, 2]
X = X.astype(np.float32)
X /= 255
return X, ids, mult
def accumulate_study_results(ids, prob):
"""
Accumulate results per study (because one study has many SAX slices),
so the averaged CDF for all slices is returned.
"""
sum_result = {}
cnt_result = {}
size = prob.shape[0]
for i in range(size):
study_id = ids[i]
idx = int(study_id)
if idx not in cnt_result:
cnt_result[idx] = 0.
sum_result[idx] = np.zeros((1, prob.shape[1]), dtype=np.float32)
cnt_result[idx] += 1
sum_result[idx] += prob[i, :]
for i in cnt_result.keys():
sum_result[i][:] /= cnt_result[i]
return sum_result
def build_submission(config):
model_systole = get_model()
model_diastole = get_model()
print('Loading models weights...')
model_systole.load_weights(config.systole_weights)
model_diastole.load_weights(config.diastole_weights)
# load val losses to use as sigmas for CDF
with open(config.val_loss_systole, 'r') as f:
val_loss_systole = float(f.readline())
with open(config.val_loss_diastole, 'r') as f:
val_loss_diastole = float(f.readline())
print('Loading validation data...')
X, ids, mult = load_validation_data()
batch_size = 32
print('Predicting on validation data...')
pred_normed_systole = model_systole.predict(X, batch_size=batch_size, verbose=1)
pred_normed_diastole = model_diastole.predict(X, batch_size=batch_size, verbose=1)
print('Normed_systole:', pred_normed_systole.shape)
print('Normed_diastole:', pred_normed_diastole.shape)
print('mult:', mult.shape)
pred_systole = pred_normed_systole[:,0] * mult
pred_diastole = pred_normed_diastole[:,0] * mult
print('systole:', pred_systole.shape)
print('diastole:', pred_diastole.shape)
# real predictions to CDF
cdf_pred_systole = real_to_cdf(pred_systole, val_loss_systole)
cdf_pred_diastole = real_to_cdf(pred_diastole, val_loss_diastole)
print('Accumulating results...')
sub_systole = accumulate_study_results(ids, cdf_pred_systole)
sub_diastole = accumulate_study_results(ids, cdf_pred_diastole)
# write to submission file
print('Writing submission to file...')
fi = csv.reader(open('/data/sample_submission_validate.csv'))
f = open(config.submission, 'w')
fo = csv.writer(f, lineterminator='\n')
fo.writerow(next(fi))
for line in fi:
idx = line[0]
key, target = idx.split('_')
key = int(key)
out = [idx]
if key in sub_systole:
if target == 'Diastole':
out.extend(list(sub_diastole[key][0]))
else:
out.extend(list(sub_systole[key][0]))
else:
print('Miss {0}'.format(idx))
fo.writerow(out)
f.close()
print('Done.')
class Config(object):
pass
if __name__ == "__main__":
prefix = '/mnt/dsb2-keras/dry-run/'
config = Config()
config.systole_weights = prefix + '19595-2-mm2-weights_systole_best.hdf5'
config.diastole_weights = prefix + '19595-3-mm2-weights_diastole_best.hdf5'
config.val_loss_systole = prefix + '19595-2-mm2-val_loss.txt'
config.val_loss_diastole = prefix + '19595-3-mm2-val_loss.txt'
config.submission = prefix + 'mm2-submission.csv'
# config.systole_weights = prefix + '19595-4-mmx-weights_systole_best.hdf5'
# config.diastole_weights = prefix + '19595-5-mmx-weights_diastole_best.hdf5'
# config.val_loss_systole = prefix + '19595-4-mmx-val_loss.txt'
# config.val_loss_diastole = prefix + '19595-5-mmx-val_loss.txt'
# config.submission = prefix + 'mm3-submission.csv'
build_submission(config)
"""
19595-0-mmx-weights_systole_best.hdf5
19595-0-mmx-weights_systole.hdf5
19595-2-0.05lr-mmx-val_loss.txt
19595-2-0.05lr-mmx-weights_systole_best.hdf5
19595-2-0.05lr-mmx-weights_systole.hdf5
19595-2-mm2-val_loss.txt
19595-2-mm2-weights_systole_best.hdf5
19595-2-mm2-weights_systole.hdf5
19595-3-mm2-val_loss.txt
19595-3-mm2-weights_diastole_best.hdf5
19595-3-mm2-weights_diastole.hdf5
19595-4-mmx-val_loss.txt
19595-4-mmx-weights_systole_best.hdf5
19595-4-mmx-weights_systole.hdf5
19595-5-mm3-weights_diastole_best.hdf5
19595-5-mm3-weights_diastole.hdf5
19595-5-mmx-val_loss.txt
19595-5-mmx-weights_diastole_best.hdf5
19595-5-mmx-weights_diastole.hdf5
19595-pre-mm2-weights_systole_best.hdf5
19595-pre-mm2-weights_systole.hdf5
19595-pre-weights_systole_best.hdf5
19595-pre-weights_systole.hdf5
pre-m-validate.npy
pre-X-train.npy
pre-X-validate.npy
pre-y-train.npy
"""