GitHub - patterja/drug_response: Scripts for drug response

Scripts for drug response calculation and plotting

Author: Hongmei Zhang Hacked for semi-functionality by: Janice Patterson

Name		Name	Last commit message	Last commit date
Latest commit History 11 Commits
GRserum_calculation.py		GRserum_calculation.py
README.md		README.md
add_gr_column.py		add_gr_column.py
add_max_drug_does_to_GRmetrics.py		add_max_drug_does_to_GRmetrics.py
barplot_for_GR50_and_serum_conc.py		barplot_for_GR50_and_serum_conc.py
barplot_for_GRmax_and_GRserum.py		barplot_for_GRmax_and_GRserum.py
boxplot_for_GRmax_and_GRserum.py		boxplot_for_GRmax_and_GRserum.py
boxplot_for_GRmetrics.py		boxplot_for_GRmetrics.py
boxplot_for_filtered_cv.py		boxplot_for_filtered_cv.py
boxplot_for_raw_cv.py		boxplot_for_raw_cv.py
calculate_GR_at_serum_conc.py		calculate_GR_at_serum_conc.py
calculate_GR_at_serum_conc_using_GRmetrics.py		calculate_GR_at_serum_conc_using_GRmetrics.py
compute_gr_metrics.py		compute_gr_metrics.py
doubling_time_calculation.py		doubling_time_calculation.py
drug_plate_mean.py		drug_plate_mean.py
drug_plate_median.py		drug_plate_median.py
drug_response_analysis_pipeline.py		drug_response_analysis_pipeline.py
drug_response_analysis_pipeline_mean.py		drug_response_analysis_pipeline_mean.py
drug_response_analysis_pipeline_median.py		drug_response_analysis_pipeline_median.py
drug_response_analysis_pipeline_median_for_3plates.py		drug_response_analysis_pipeline_median_for_3plates.py
generate_input_for_gr50_tools.py		generate_input_for_gr50_tools.py
generate_layout_step1.py		generate_layout_step1.py
generate_layout_step2.py		generate_layout_step2.py
generate_the_cv_table.py		generate_the_cv_table.py
gr50_and_curve_count_barplot.py		gr50_and_curve_count_barplot.py
hafner_analysis_pipeline.py		hafner_analysis_pipeline.py
heatmap3_new.R		heatmap3_new.R
heatmap_add_complex_sidebar.R		heatmap_add_complex_sidebar.R
heatmap_for_384_matrix.py		heatmap_for_384_matrix.py
heatmap_for_GR50_median_center.py		heatmap_for_GR50_median_center.py
heatmap_for_GR50_serum_center.py		heatmap_for_GR50_serum_center.py
heatmap_plot_for_384_matrix_compound.py		heatmap_plot_for_384_matrix_compound.py
plot.py		plot.py
plot_curves.py		plot_curves.py
plot_figure.py		plot_figure.py
scanR2tsv.py		scanR2tsv.py
scatter_plot_for_stdev.py		scatter_plot_for_stdev.py

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