Weighted motif enrichment analysis

To set up WiNNie for a run, please make sure you have installed CONDA. We are using a conda environment to install all needed dependencies.

1. Clone the directory:

git clone https://github.com/petrokvitka/WiNNie.git/

2. Switch to the directory:

cd WiNNie

3. Create the needed conda environment from the file winnie.yaml:

conda env create --file winnie.yaml

4. Activate the environment:

source activate winnie

5. You are ready to use the WiNNie! To learn how to use it, just type:

python winnie.py -h