inferProfiles

MLE estimation of morphogen profiles

In MATLAB folder:

IntroducingScaling: Figure 2A: illustrating the difference in P(x|m) and P(m|x) for Bcd profiles from long vs. short embryos
PlotCFLengthVsSession: Plot mean vs. standard deviation of cephalic furrow position in relative coordinates for all imaging sessions, where marker size reflects number of embryos in each session
PlotCFPosErrorAndScaling: Bottom section of Fig1A and 1B, illustrating the concepts of positional error and scaling with real cephalic furrow data

Name		Name	Last commit message	Last commit date
Latest commit History 34 Commits
MATLAB		MATLAB
.gitignore		.gitignore
.project		.project
Beltrami.py		Beltrami.py
DualSplineSmoother.py		DualSplineSmoother.py
EasyMLELiu.py		EasyMLELiu.py
ExpData.py		ExpData.py
LiuDatasetProcess.py		LiuDatasetProcess.py
LiuDists.py		LiuDists.py
LiuHugeDatasetProcess.py		LiuHugeDatasetProcess.py
LiuPlots.py		LiuPlots.py
LogMaxLikelihoodLiu.py		LogMaxLikelihoodLiu.py
MLBomyiSpline.py		MLBomyiSpline.py
MaxLikelihood.py		MaxLikelihood.py
MaxLikelihoodLiu.py		MaxLikelihoodLiu.py
MaxLikelihoodLiuSpline.py		MaxLikelihoodLiuSpline.py
MaxLikelihoodLiuSplineLognormal.py		MaxLikelihoodLiuSplineLognormal.py
README.md		README.md
SplineSmoother.py		SplineSmoother.py
analyticScaling.py		analyticScaling.py
cephalic.py		cephalic.py
comparisonPlots.py		comparisonPlots.py
config.py		config.py
emergentScaling.py		emergentScaling.py
ks_test.py		ks_test.py
main.py		main.py
pcaPresentationFig.py		pcaPresentationFig.py
plotEmbryoVolume.py		plotEmbryoVolume.py
scalingBcdSummary.py		scalingBcdSummary.py
scalingBicoid.py		scalingBicoid.py
scalingBicoidFinalReally.py		scalingBicoidFinalReally.py
scalingBicoidGFPSession.py		scalingBicoidGFPSession.py
scalingBicoidSessions.py		scalingBicoidSessions.py
scalingBicoidTempVaried.py		scalingBicoidTempVaried.py
scalingLESE.py		scalingLESE.py
scalingMutantAll.py		scalingMutantAll.py
scalingMutantProfiles.py		scalingMutantProfiles.py
scalingProfiles.py		scalingProfiles.py
scalingTest.py		scalingTest.py
si_figures.py		si_figures.py
testgapgenes.py		testgapgenes.py

tmramalho/inferProfiles