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Galaxy-Owncloud-Integration

Galaxy-Owncloud integration consists of two parts:

  • Galaxy import/export tool - tool to send Galaxy datasets to Owncloud or fetch them into Galaxy
  • Owncloud App - adds "send to Galaxy" action to files in owncloud.

Galaxy import/export tool

Must be installed on the Galaxy server in order to enable the transfer of files from Owncloud to Galaxy or to send files from Galaxy back to Owncloud.

Administrators will need to copy the sample user_preferences_extra_conf.yml.sample into Galaxy's config folder and modify user_preferences_extra_conf_path in galaxy.yml to point to it. This will add some extra fields to the Galaxy user profile so that users can select their Owncloud server, and specify their Owncloud username/password.

Owncloud App

Adds "send to Galaxy" action to files in owncloud. Users may then select the Galaxy server they wish to send their file to from a dropdown menu. Configure this list in the galaxyconnect.js file.

TODO: add galaxy server from POST parameter to list of servers

Licence (MIT)

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

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