LIver Surgery Analyser.

See our install notes for Linux, Mac OS and Windows

Get stable branche

git clone --recursive -b stable https://github.com/mjirik/lisa.git

or for current developement

git clone --recursive git@github.com:mjirik/lisa.git

or

git clone git@github.com:mjirik/lisa.git
git submodule update --init --recursive

or use Lisa in Ubuntu for VirtualBox

python mysetup.py -d

Object (usualy liver) extraction is started by organ_segmentation script

./lisa.sh

or

python lisa.py

Segmentation use two types of seeds wich are setted by left and right mouse button. For better volume measurement control use additional parameters for example "-mroi" and "-vs 0.8". If "-mroi" parameter is used you can select region of interest.

Vessel localization uses saved data (organ.pkl) from organ_segmentation:

python src/vessels_segmentation.py -bg -i organ.pkl

Now user interactivity is used to set threshold parametr.

Virtual liver resection is based on data stored in previous step (vessels.pkl).

python src/vessel_cut.py -oe -i vessels.pkl

In this script is selected cut on vessel by user interactivity. Resected and remaining volume is then calculated.

nosetests