Code for working with epiGBS data.
PEAR: a fast and accurate Illumina Paired-End reAd mergeR Zhang et al (2014) Bioinformatics 30(5): 614-620 | doi:10.1093/bioinformatics/btt593
usearch (C) Copyright 2013 Robert C. Edgar, all rights reserved. http://drive5.com/usearch
seqtk
pysam
biopython
bcftools
samtools
vcfutils.pl
pyfaidx
rename_fast.py
pigz
bwa-mem