pip3 install py2cytoscapepip3 install git+https://github.com/cytoscape/py2cytoscape.gitgit clone https://github.com/igraph/python-igraph/
cd python-igraph
git clone https://github.com/igraph/igraph igraphcore
cd igraphcore
./bootstrap.sh
mkdir _build && cd _build
../configure --prefix=$PWD/../_install
make
make install
cd ../../
CPPFLAGS="-I$PWD/igraphcore/_install/include/igraph ${CPPFLAGS}"
export CPPFLAGS
LDFLAGS="-L$PWD/igraphcore/_install/lib ${LDFLAGS}"
export LDFLAGS
PKG_CONFIG_PATH=igraphcore/_install/lib/pkgconfig/
export PKG_CONFIG_PATH
python3 setup.py install --user
Package documentation can be found on https://py2cytoscape.readthedocs.io.
For contributing please check the wiki.
Full workflows can be found on the cytoscape/cytoscape-automation repo. The following workflows include cyrest usage:
Ono, K. et al. (2015) CyREST: Turbocharging Cytoscape Access for External Tools via a RESTful API. F1000Res, 4, 478
Note to repository maintainers: Please *DO NOT* move this page ... the Cytoscape Automation paper refers directly to it.