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Compiling
1.1 binary:
*) mkdir -p build/Release && cd build/Release *) cmake ../.. -DCMAKE_BUILD_TYPE=Release -DCMAKE_CXX_COMPILER=g++ -G "Unix Makefiles" *) make
1.2 shared library (for python bindings):
*) mkdir -p build/Release && cd build/Release *) cmake ../.. -DSHAREDLIBRARY=TRUE -DCMAKE_BUILD_TYPE=Release -DCMAKE_CXX_COMPILER=g++ -G "Unix Makefiles" *) make
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Python bindings
*) set your TRIPLEXATOR_LIBRARY environment variable to the location of the Triplexator shared library (libtriplexator.so)
*) import triplexator module from TRIPLEXATOR_HOME/python_bindings/
*) call runTriplexator function with the regular Triplexator parameters as string param.
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Run Triplexator with the following options
- --bit-parallel: for bit parallel (faster) version of brute-force
- --auto-binding-file [file]: for semi-palindromic (local auto-binding) search
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