def __init__(self, parent, *args, **kw): BasePopup.__init__(self, parent=parent, title='Create axis unit', modal=True, **kw)
def __init__(self, parent, *args, **kw): self.spectrumConditions = [] self.col = None self.spectrum = None BasePopup.__init__(self, parent=parent, title='New Contour File', **kw)
def __init__(self, parent, *args, **kw): self.guiParent = parent self.sourceName = 'RefDB' self.chemAtomNmrRefs = {} BasePopup.__init__(self, parent=parent, title="Resonance : Reference Chemical Shifts", **kw)
def destroy(self): for func in ('__init__','delete','setName'): self.unregisterNotify(self.updateSpectra, 'ccp.nmr.Nmr.Experiment', func) self.unregisterNotify(self.updateSpectra, 'ccp.nmr.Nmr.DataSource', func) BasePopup.destroy(self)
def __init__(self, parent, *args, **kw): self.waiting = False self.molSystem = None self.residue = None self.jCouplings = [] self.atomNames = [] self.measureJCouplingList = None self.predictJCouplingList = None self.coeffAtomNames = [] self.coefficients = {} self.coefficient = None for i in range(3): self.coefficients[i] = {} BasePopup.__init__( self, parent=parent, title='Predict Karplus Coefficients from J Coupling', **kw) self.updateJCouplingLists() self.updateMolSystems() self.updateAfter()
def destroy(self): for func in ('__init__', 'delete', 'setName'): self.unregisterNotify(self.updateWindows, 'ccpnmr.Analysis.SpectrumWindow', func) BasePopup.destroy(self)
def destroy(self): for func in ('__init__', 'delete'): self.unregisterNotify(self.updateStructureGen, 'ccp.nmr.Nmr.StructureGeneration', func) BasePopup.destroy(self)
def destroy(self): for func in ('__init__', 'delete', 'setAnnotation', 'setNumAliasing', 'setPosition'): self.unregisterNotify(self.updateAfter, 'ccp.nmr.Nmr.PeakDim', func) BasePopup.destroy(self)
def __init__(self, parent, *args, **kw): self.spectrum = None BasePopup.__init__(self, parent=parent, title='Add existing contour file', **kw)
def __init__(self, parent): BasePopup.__init__(self, parent=parent, title=" Dangle Prediction Graph", transient=False, borderwidth=6) parent.protocol("WM_DELETE_WINDOW", self.close) self.geometry('700x700+50+50')
def __init__(self, parent, isModal=False, *args, **kw): title = 'Project : Register with CCPN' BasePopup.__init__(self, parent=parent, title=title, modal=isModal, **kw)
def __init__(self, parent, *args, **kw): self.guiParent = parent self.expSeries = None self.conditionPoint = None self.waiting = 0 BasePopup.__init__(self, parent, title="Experiment : NMR Series", **kw)
def __init__(self, parent, *args, **kw): self.spectrum = None BasePopup.__init__(self, parent=parent, title='Peak : Peak Finding', **kw)
def __init__(self, parent, *args, **kw): self.measurementType = None BasePopup.__init__(self, parent=parent, title='Create axis type', modal=True, **kw)
def __init__(self, parent, *args, **kw): self.axisType = None BasePopup.__init__(self, parent=parent, title='Create panel type', modal=True, **kw)
def open(self): self.updateAxisUnitTable() self.updateAxisTypeTable() self.updatePanelTypeTable() self.selectAxisUnit() self.selectAxisType() self.selectPanelType() BasePopup.open(self)
def __init__(self, parent, *args, **kw): self.waiting = False self.contourFileDir = None BasePopup.__init__(self, parent=parent, title='Spectrum Contour Files', **kw)
def __init__(self, parent, *args, **kw): self.chain = None self.shiftList = None self.predictionDict = {} BasePopup.__init__(self, parent=parent, title='Structure : Predict Secondary Structure')
def __init__(self, parent, dataDim, position): self.dataDim = dataDim self.position = position BasePopup.__init__(self, parent=parent, title='Set spectrum referencing', modal=True, transient=True)
def __init__(self, parent, peak=None, *args, **kw): self.peak = peak self.peakDim = None self.guiParent = parent BasePopup.__init__(self, parent=parent, title="Edit Peak Aliasing", **kw)
def __init__(self, parent, *args, **kw): self.experiment = None self.currentObject = None #self.currentObjects = [] # looks obsolete BasePopup.__init__(self, parent=parent, title='Experiment : Open Spectra', **kw)
def destroy(self): for func in ('__init__', 'delete'): self.unregisterNotify(self.updateChains, 'ccp.molecule.MolSystem.Chain', func) for func in ('__init__', 'delete'): self.unregisterNotify(self.updateShiftLists, 'ccp.nmr.Nmr.ShiftList', func) BasePopup.destroy(self)
def __init__(self, parent, *args, **kw): self.residue = None self.chain = None self.shiftList = None BasePopup.__init__(self, parent=parent, title="Molecule : Residue Information", **kw)
def __init__(self, parent, *args, **kw): self.guiParent = parent self.peakLists = [] self.constraintLists = [] self.constraintSet = None BasePopup.__init__(self, parent=parent, title="Chart : Residue Interaction Matrix", **kw)
def __init__(self, parent, *args, **kw): self.chain = None self.shiftList = None self.predictionDict = {} BasePopup.__init__( self, parent=parent, title='Data Analysis : Predict Shifts from Sequence')
def destroy(self): for func in ('__init__', 'delete', 'setValue', 'setError'): for clazz in ('ccp.nmr.Nmr.JCoupling', ): self.unregisterNotify(self.updateAfter, clazz, func) for func in ('__init__', 'delete'): for clazz in ('ccp.nmr.Nmr.JCouplingList', ): self.unregisterNotify(self.updateJCouplingLists, clazz, func) BasePopup.destroy(self)
def __init__(self, parent, *args, **kw): self.visibleSpectra = parent.visibleSpectra self.toolbarSpectra = parent.toolbarSpectra self.waiting = False self.window = None BasePopup.__init__(self, parent=parent, title='Window : New Window', **kw)
def __init__(self, parent, *args, **kw): self.font = 'Helvetica 10' self.sFont = 'Helvetica %d' self.project = parent.project self.guiParent = parent self.chemCompDict = {} self.createChemCompDict() self.waiting = False BasePopup.__init__(self, parent, title="Residue Type Probabilities", **kw)
def destroy(self): for clazz in ('ccp.nmr.Nmr.Experiment', 'ccp.nmr.Nmr.DataSource'): self.registerNotify(self.updateAfter, clazz, 'setName') for func in ('__init__', 'delete', ''): self.unregisterNotify(self.updateAfter, 'ccpnmr.Analysis.StoredContour', func) ###self.unregisterNotify(self.updateAfter, 'memops.Implementation.Url', 'setPath') BasePopup.destroy(self)
def destroy(self): for func in ('__init__', 'delete'): for clazz in ('ccp.nmr.Nmr.ShiftList', ): self.unregisterNotify(self.updateShiftLists, clazz, func) for func in ('__init__', 'delete', 'setNmrChains', 'setResidue', 'setResonances', 'addResonance', 'removeResonance'): self.unregisterNotify(self.updateSpinSystemsAfter, 'ccp.nmr.Nmr.ResonanceGroup', func) BasePopup.destroy(self)
def __init__(self, parent, *args, **kw): self.molSystem = None self.structure = None self.model = None self.waiting = False self.colorScheme = None self.ccpCode = None # Which Rama background to use self.residue = None self.labelMode = LABEL_MODES[1] BasePopup.__init__(self, parent=parent, title='Chart : Ramachandran Plot', **kw)
def __init__(self, parent, *args, **kw): '''Init. Args: parent: guiParent. ''' self.guiParent = parent self.spinSystem1 = None self.spinSystem2 = None self.correction = True self.protonatedShiftList = None self.deuteratedShiftList = None BasePopup.__init__(self, parent, title="Compare Spin Systems", **kw) self.waiting = False
def __init__(self, parent, controler, *args, **kw): self.font = 'Helvetica 10' self.sFont = 'Helvetica %d' self.project = parent.project self.guiParent = parent self.sourceName = 'RefDB' self.connector = controler self.tabbedFrame = None self.saveLoadTab = None self.assignTab = None self.spectrumSelectionTab = None self.resultsTab = None self.annealingSettingsTab = None self.infoLabel = None self.waiting = False BasePopup.__init__(self, parent, title="Assignment Suggestions", **kw)
def open(self): self.updateAfter() BasePopup.open(self)
def destroy(self): '''Destroy the popup.''' self.administerNotifiers(self.unregisterNotify) BasePopup.destroy(self)
def open(self): '''Open the popup. A standard method.''' self.updateAfter() BasePopup.open(self)