def create_service(cerise_config):
"""
Create a Cerise service if one is not already running,
using the `cerise_config` file.
"""
srv = None
try:
srv = cc.require_managed_service(cerise_config['docker_name'],
cerise_config.get('port', 29593),
cerise_config['docker_image'],
cerise_config['username'],
cerise_config['password'])
print("Created a new Cerise-client service")
except docker.errors.APIError as e:
print(e)
pass
return srv
#!/usr/bin/env python3
import cerise_client.service as cs
import time
srv = cs.require_managed_service('cerise-example-test', 29593,
'cerise-example')
# If your specialisation is not working, the following will print the
# Cerise server log. That should give you an error message describing
# what went wrong.
# print(srv.get_log())
job = srv.create_job('test_job')
job.set_workflow('test_workflow.cwl')
job.run()
while job.is_running():
time.sleep(0.1)
# If something goes wrong executing the job, this will print the job log.
# print(job.log)
print(job.outputs['output'].text)
srv.destroy_job(job)
cs.destroy_managed_service(srv)
from __future__ import print_function
from time import sleep
import cerise_client.service as cc
import os
# Create a new service for user myuser, with given cluster credentials
env = os.environ
srv = cc.require_managed_service('scientist_das5', 29593,
'mdstudio/cerise-mdstudio-das5:develop',
os.environ['CERISE_DAS5_USERNAME'],
os.environ['CERISE_DAS5_PASSWORD'])
# srv = cc.require_managed_service(
# 'scientist_binac', 29593,
# 'mdstudio/cerise-mdstudio-binac:develop',
# os.environ['CERISE_BINAC_USERNAME'],
# os.environ['CERISE_BINAC_PASSWORD'])
# srv = cc.require_managed_service(
# 'scientist_gt', 29593,
# 'mdstudio/cerise-mdstudio-gt:develop',
# os.environ['CERISE_GT_USERNAME'],
# os.environ['CERISE_GT_PASSWORD'])
# Start a new service
cc.start_managed_service(srv)
# Create a job and set workflow and inputs
print("Creating job")
job = srv.create_job('decompose_include')
import cerise_client.service as cc
import time
srv = cc.require_managed_service('my-cerise-service', 29593,
'mdstudio/cerise:develop')
cc.start_managed_service(srv)
job = srv.create_job('example_job')
job.set_workflow('./example_workflow.cwl')
job.add_input_file('input_file', __file__)
job.run()
# Give the service a chance to stage the job
while job.state == 'Waiting':
time.sleep(1)
persisted_srv = cc.service_to_dict(srv)
persisted_job = job.id
cc.stop_managed_service(srv)
# store the dict somewhere in persistent storage
# stop client software, shut down computer, etc.
# start computer and client software again
# get dict from persistent storage
srv = cc.service_from_dict(persisted_srv)
cc.start_managed_service(srv)
job = srv.get_job_by_id(persisted_job)